#!/bin/bash -xv

# the script processes a set of DARK frames.
# The images are overscan corrected and stacked without
# any rescaling. This script is the parallel version
# and uses the 'preprocess' program to perform the
# reduction. In contrary to the script version based
# on FLIPS, the individual preprocessed images are NOT
# saved to disk but only the final coadded calibration
# frames.
# It assumes that all images from ONE chip reside
# in the same physical directory

# $1: master directory
# $2: subdirectory with the DARK images
# $3: chips to work on
 
# The result images are in the $1/$2 directory and have
# the same basic name as the subdirectory, f.I.
# The images are in .../DARK. Then the stacked 
# images have the names .../DARK/DARK_i.fits, where i=1..NCHIPS.

#
# 27.04.2005:
# I rewrote the script to use the MAXIMAGE parameter in preprocess
# and the imcat-based imcombflat for the actual coaddition.

# preliminary work:
INSTDIR=instruments_professional
+ INSTDIR=instruments_professional
if [ ! -f ${INSTDIR}/${INSTRUMENT}.ini ]; then
    INSTDIR=instruments_commercial
fi
+ '[' '!' -f instruments_professional/Moravian10z.ini ']'
+ INSTDIR=instruments_commercial
if [ ! -f ${INSTDIR}/${INSTRUMENT}.ini ]; then
    INSTDIR=~/.theli/instruments_user/
fi
+ '[' '!' -f instruments_commercial/Moravian10z.ini ']'
+ INSTDIR=/home/albireo/.theli/instruments_user/
. ${INSTDIR}/${INSTRUMENT:?}.ini
+ . /home/albireo/.theli/instruments_user//Moravian10z.ini
# **************************************************************
#            Instrument config file created by THELI
# **************************************************************

# Name of the instrument (must be unique!)
INSTRUMENT=Moravian10z
++ INSTRUMENT=Moravian10z

# Number of chips
NCHIPS=1
++ NCHIPS=1

# We need to export these
export INSTRUMENT
++ export INSTRUMENT
export NCHIPS
++ export NCHIPS

# Load directories for programs
. progs.ini
++ . progs.ini
# If we include this script in bash verbose and trace mode we do not want
# all the (verbose) output from this script:
USE_X=0
+++ USE_X=0
if  [[ ${-/x} != $- ]] ; then
  USE_X=1
  set +xv
fi
+++ [[ hvB != hvxB ]]
+++ USE_X=1
+++ set +xv
#
# this is needed for the GUI
#
P_PIPELIBS=/home/albireo/THELI/PipeLibs//pipe.csh
+++ P_PIPELIBS=/home/albireo/THELI/PipeLibs//pipe.csh
P_GETPMMOBJECTS=${BIN}/get_pmm_objects
+++ P_GETPMMOBJECTS=/home/albireo/THELI/theli//bin/Linux_64//get_pmm_objects
P_LDACDESC=${BIN}/ldacdesc
+++ P_LDACDESC=/home/albireo/THELI/theli//bin/Linux_64//ldacdesc
P_LDACDELTAB=${BIN}/ldacdeltab
+++ P_LDACDELTAB=/home/albireo/THELI/theli//bin/Linux_64//ldacdeltab
P_LDACDELKEY=${BIN}/ldacdelkey
+++ P_LDACDELKEY=/home/albireo/THELI/theli//bin/Linux_64//ldacdelkey
P_LDACPUTXY=${BIN}/ldacputxy
+++ P_LDACPUTXY=/home/albireo/THELI/theli//bin/Linux_64//ldacputxy
P_FITSFLIP=${BIN}/fitsflip
+++ P_FITSFLIP=/home/albireo/THELI/theli//bin/Linux_64//fitsflip
P_DEBLOOM=${BIN}/debloom
+++ P_DEBLOOM=/home/albireo/THELI/theli//bin/Linux_64//debloom
P_EQUALISEBAYERFLAT=${BIN}/equalisebayerflat
+++ P_EQUALISEBAYERFLAT=/home/albireo/THELI/theli//bin/Linux_64//equalisebayerflat
P_FITSCOLLAPSE=${BIN}/fitscollapse
+++ P_FITSCOLLAPSE=/home/albireo/THELI/theli//bin/Linux_64//fitscollapse
P_FITSWRAP=${BIN}/fitswrap
+++ P_FITSWRAP=/home/albireo/THELI/theli//bin/Linux_64//fitswrap
P_FITSCUBESLICE=${BIN}/fitscubeslice
+++ P_FITSCUBESLICE=/home/albireo/THELI/theli//bin/Linux_64//fitscubeslice
P_FITSADDKEY=${BIN}/fitsaddkey
+++ P_FITSADDKEY=/home/albireo/THELI/theli//bin/Linux_64//fitsaddkey
P_FITSCUT=${BIN}/fitscut
+++ P_FITSCUT=/home/albireo/THELI/theli//bin/Linux_64//fitscut
P_FITSBIN=${BIN}/fitsbin
+++ P_FITSBIN=/home/albireo/THELI/theli//bin/Linux_64//fitsbin
P_FITSBLOOMDETECT=${BIN}/fitsbloomdetect
+++ P_FITSBLOOMDETECT=/home/albireo/THELI/theli//bin/Linux_64//fitsbloomdetect
P_FITSFILL=${BIN}/fitsfill
+++ P_FITSFILL=/home/albireo/THELI/theli//bin/Linux_64//fitsfill
P_FITSGRAD=${BIN}/fitsgrad
+++ P_FITSGRAD=/home/albireo/THELI/theli//bin/Linux_64//fitsgrad
P_FITSDEMOSAICBAYER=${BIN}/fitsdemosaicbayer
+++ P_FITSDEMOSAICBAYER=/home/albireo/THELI/theli//bin/Linux_64//fitsdemosaicbayer
P_FITS3MAX=${BIN}/fits3max
+++ P_FITS3MAX=/home/albireo/THELI/theli//bin/Linux_64//fits3max
P_FITSGAUSS=${BIN}/fitsgauss
+++ P_FITSGAUSS=/home/albireo/THELI/theli//bin/Linux_64//fitsgauss
P_FITS2TIFF=${BIN}/fits2tiff
+++ P_FITS2TIFF=/home/albireo/THELI/theli//bin/Linux_64//fits2tiff
P_TIFF2FITS=${BIN}/tiff2fits
+++ P_TIFF2FITS=/home/albireo/THELI/theli//bin/Linux_64//tiff2fits
P_CORRLIRIS=${BIN}/corrliris
+++ P_CORRLIRIS=/home/albireo/THELI/theli//bin/Linux_64//corrliris
P_CROSSTALK=${BIN}/crosstalk
+++ P_CROSSTALK=/home/albireo/THELI/theli//bin/Linux_64//crosstalk
P_FINDGSC=${BIN}/findgsc
+++ P_FINDGSC=/home/albireo/THELI/theli//bin/Linux_64//findgsc
P_FINDUSNOB1=${BIN}/findusnob1
+++ P_FINDUSNOB1=/home/albireo/THELI/theli//bin/Linux_64//findusnob1
P_FIND2MASS=${BIN}/find2mass
+++ P_FIND2MASS=/home/albireo/THELI/theli//bin/Linux_64//find2mass
P_FINDSDSS7=${BIN}/findsdss7
+++ P_FINDSDSS7=/home/albireo/THELI/theli//bin/Linux_64//findsdss7
P_FINDUCAC3=${BIN}/finducac3
+++ P_FINDUCAC3=/home/albireo/THELI/theli//bin/Linux_64//finducac3
P_FINDNOMAD1=${BIN}/findnomad1
+++ P_FINDNOMAD1=/home/albireo/THELI/theli//bin/Linux_64//findnomad1
P_VIZQUERY=${BIN}/vizquery
+++ P_VIZQUERY=/home/albireo/THELI/theli//bin/Linux_64//vizquery
P_SESAME=${BIN}/sesame
+++ P_SESAME=/home/albireo/THELI/theli//bin/Linux_64//sesame
P_ACLIENT=${BIN}/aclient
+++ P_ACLIENT=/home/albireo/THELI/theli//bin/Linux_64//aclient
P_SCAMP=${BIN}/scamp
+++ P_SCAMP=/home/albireo/THELI/theli//bin/Linux_64//scamp
P_RENAME=${BIN}/rename
+++ P_RENAME=/home/albireo/THELI/theli//bin/Linux_64//rename
P_MISSFITS=${BIN}/missfits
+++ P_MISSFITS=/home/albireo/THELI/theli//bin/Linux_64//missfits
P_SWARPFILTER=${BIN}/swarpfilter
+++ P_SWARPFILTER=/home/albireo/THELI/theli//bin/Linux_64//swarpfilter
P_FITSBLOCKEDIT=${BIN}/fitsblockedit
+++ P_FITSBLOCKEDIT=/home/albireo/THELI/theli//bin/Linux_64//fitsblockedit
P_FITSMASK=${BIN}/fitsmask
+++ P_FITSMASK=/home/albireo/THELI/theli//bin/Linux_64//fitsmask
P_FITSMEDIAN=${BIN}/fitsmedian
+++ P_FITSMEDIAN=/home/albireo/THELI/theli//bin/Linux_64//fitsmedian
P_FITSNANMASK=${BIN}/fitsnanmask
+++ P_FITSNANMASK=/home/albireo/THELI/theli//bin/Linux_64//fitsnanmask
P_FITSSTAT=${BIN}/fitsstat
+++ P_FITSSTAT=/home/albireo/THELI/theli//bin/Linux_64//fitsstat
P_FITSSPLITBAYER=${BIN}/fitssplitbayer
+++ P_FITSSPLITBAYER=/home/albireo/THELI/theli//bin/Linux_64//fitssplitbayer
P_FITSGUESSGEOM=${BIN}/fitsguessgeom
+++ P_FITSGUESSGEOM=/home/albireo/THELI/theli//bin/Linux_64//fitsguessgeom
P_SPLITSUPRIMECAM=${BIN}/splitsuprimecam
+++ P_SPLITSUPRIMECAM=/home/albireo/THELI/theli//bin/Linux_64//splitsuprimecam
P_PASTEDUALCHANNEL=${BIN}/paste_dualchannel
+++ P_PASTEDUALCHANNEL=/home/albireo/THELI/theli//bin/Linux_64//paste_dualchannel
P_PASTEQUADCHANNEL=${BIN}/paste_quadchannel
+++ P_PASTEQUADCHANNEL=/home/albireo/THELI/theli//bin/Linux_64//paste_quadchannel
P_SPLITGMOSMULTIPORT=${BIN}/split_gmos_multiport
+++ P_SPLITGMOSMULTIPORT=/home/albireo/THELI/theli//bin/Linux_64//split_gmos_multiport
P_SPLITGROND=${BIN}/split_grond
+++ P_SPLITGROND=/home/albireo/THELI/theli//bin/Linux_64//split_grond
P_GETSHIFT=${BIN}/get_shift
+++ P_GETSHIFT=/home/albireo/THELI/theli//bin/Linux_64//get_shift
P_FITSNONLINEARITY=${BIN}/fitsnonlinearity
+++ P_FITSNONLINEARITY=/home/albireo/THELI/theli//bin/Linux_64//fitsnonlinearity
P_FITSPIC=${BIN}/fitspic
+++ P_FITSPIC=/home/albireo/THELI/theli//bin/Linux_64//fitspic
P_FITSPOLYGON=${BIN}/fitspolygon
+++ P_FITSPOLYGON=/home/albireo/THELI/theli//bin/Linux_64//fitspolygon
P_EXPANDSEXMASK=${BIN}/expand_sexmask
+++ P_EXPANDSEXMASK=/home/albireo/THELI/theli//bin/Linux_64//expand_sexmask
P_DCRAW=${BIN}/dcraw
+++ P_DCRAW=/home/albireo/THELI/theli//bin/Linux_64//dcraw
P_DECSEXCONV=${BIN}/decsexconv
+++ P_DECSEXCONV=/home/albireo/THELI/theli//bin/Linux_64//decsexconv
P_STIFF=${BIN}/stiff
+++ P_STIFF=/home/albireo/THELI/theli//bin/Linux_64//stiff
P_SUBSKY=${BIN}/subsky
+++ P_SUBSKY=/home/albireo/THELI/theli//bin/Linux_64//subsky
P_GIFSICLE=${BIN}/gifsicle
+++ P_GIFSICLE=/home/albireo/THELI/theli//bin/Linux_64//gifsicle
P_XY2SKY=${BIN}/xy2sky
+++ P_XY2SKY=/home/albireo/THELI/theli//bin/Linux_64//xy2sky
P_SKY2XY=${BIN}/sky2xy
+++ P_SKY2XY=/home/albireo/THELI/theli//bin/Linux_64//sky2xy
P_ISFITS=${BIN}/isfits
+++ P_ISFITS=/home/albireo/THELI/theli//bin/Linux_64//isfits
P_GETKEY=${BIN}/getkey
+++ P_GETKEY=/home/albireo/THELI/theli//bin/Linux_64//getkey
P_SKY2XY_HELPER=${BIN}/sky2xy_helper
+++ P_SKY2XY_HELPER=/home/albireo/THELI/theli//bin/Linux_64//sky2xy_helper
P_GET_ROTIMSIZE=${BIN}/get_rotimsize
+++ P_GET_ROTIMSIZE=/home/albireo/THELI/theli//bin/Linux_64//get_rotimsize
P_CLEANSTRING=${BIN}/cleanstring
+++ P_CLEANSTRING=/home/albireo/THELI/theli//bin/Linux_64//cleanstring
P_NUMCPU=${BIN}/numcpu
+++ P_NUMCPU=/home/albireo/THELI/theli//bin/Linux_64//numcpu
P_GETSTATS=${BIN}/getstats
+++ P_GETSTATS=/home/albireo/THELI/theli//bin/Linux_64//getstats
P_CDELT2CD=${BIN}/cdelt2cd
+++ P_CDELT2CD=/home/albireo/THELI/theli//bin/Linux_64//cdelt2cd
P_GETCDMATRIX=${BIN}/get_cdmatrix
+++ P_GETCDMATRIX=/home/albireo/THELI/theli//bin/Linux_64//get_cdmatrix
P_GETPIXSCALE=${BIN}/get_pixscale
+++ P_GETPIXSCALE=/home/albireo/THELI/theli//bin/Linux_64//get_pixscale
P_GETPOSANGLE=${BIN}/get_posangle
+++ P_GETPOSANGLE=/home/albireo/THELI/theli//bin/Linux_64//get_posangle
P_GETREFCATRADIUS=${BIN}/get_refcat_radius
+++ P_GETREFCATRADIUS=/home/albireo/THELI/theli//bin/Linux_64//get_refcat_radius
P_MERGEDAT=${BIN}/mergedat
+++ P_MERGEDAT=/home/albireo/THELI/theli//bin/Linux_64//mergedat
P_ROTATECDMATRIX=${BIN}/rotate_cdmatrix
+++ P_ROTATECDMATRIX=/home/albireo/THELI/theli//bin/Linux_64//rotate_cdmatrix
P_BACKGROUNDDYNAMIC=${BIN}/background_dynamic
+++ P_BACKGROUNDDYNAMIC=/home/albireo/THELI/theli//bin/Linux_64//background_dynamic
P_BACKGROUNDSTATIC=${BIN}/background_static
+++ P_BACKGROUNDSTATIC=/home/albireo/THELI/theli//bin/Linux_64//background_static
P_MJD=${BIN}/mjd
+++ P_MJD=/home/albireo/THELI/theli//bin/Linux_64//mjd
P_LST=${BIN}/lst
+++ P_LST=/home/albireo/THELI/theli//bin/Linux_64//lst
P_IMALYZER=${BIN}/imalyzer
+++ P_IMALYZER=/home/albireo/THELI/theli//bin/Linux_64//imalyzer
P_E2ELL=${BIN}/e2ell
+++ P_E2ELL=/home/albireo/THELI/theli//bin/Linux_64//e2ell
P_FITSSMOOTHEDGE=${BIN}/fitssmoothedge
+++ P_FITSSMOOTHEDGE=/home/albireo/THELI/theli//bin/Linux_64//fitssmoothedge
P_FITSEXTRACTEXT=${BIN}/fitsextractext
+++ P_FITSEXTRACTEXT=/home/albireo/THELI/theli//bin/Linux_64//fitsextractext
P_ERRTEST=${BIN}/errtest
+++ P_ERRTEST=/home/albireo/THELI/theli//bin/Linux_64//errtest
P_BUILDINDEX=${BIN_ANET}/build-astrometry-index
+++ P_BUILDINDEX=/home/albireo/THELI/theli//gui/packages/astrometry/build/bin//build-astrometry-index
P_SOLVEFIELD=${BIN_ANET}/solve-field
+++ P_SOLVEFIELD=/home/albireo/THELI/theli//gui/packages/astrometry/build/bin//solve-field
P_XCORR=${BIN}/xcorr
+++ P_XCORR=/home/albireo/THELI/theli//bin/Linux_64//xcorr
#
# load the parameter files
#
. ~/.theli/param_set1.ini
+++ . /home/albireo/.theli/param_set1.ini
PROJECTNAME=Pferdekopf
++++ PROJECTNAME=Pferdekopf
NPARA=1
++++ NPARA=1
GUIVERSION=2.9.5
++++ GUIVERSION=2.9.5
KERNEL=Linux
++++ KERNEL=Linux
NFRAMES=47
++++ NFRAMES=47
V_PRE_SPLITMIRCUBE=N
++++ V_PRE_SPLITMIRCUBE=N
V_DO_BIAS=N
++++ V_DO_BIAS=N
V_DO_FLAT=Y
++++ V_DO_FLAT=Y
V_NONLINCORR=N
++++ V_NONLINCORR=N
V_AP_SERVER=vizier.u-strasbg.fr
++++ V_AP_SERVER=vizier.u-strasbg.fr
V_AP_MAGLIM=20
++++ V_AP_MAGLIM=20
V_AP_RADIUS=30
++++ V_AP_RADIUS=30
V_AP_REFRA=header
++++ V_AP_REFRA=header
V_AP_REFDEC=header
++++ V_AP_REFDEC=header
. ~/.theli/param_set2.ini
+++ . /home/albireo/.theli/param_set2.ini
V_PRE_RENAME_CHECKED=0
++++ V_PRE_RENAME_CHECKED=0
V_RENAME_FITSKEY=ARCFILE
++++ V_RENAME_FITSKEY=ARCFILE
V_SORT_FITSKEY=OBJECT
++++ V_SORT_FITSKEY=OBJECT
V_SORT_BIAS=
++++ V_SORT_BIAS=
V_SORT_DARK=
++++ V_SORT_DARK=
V_SORT_DOMEFLAT=
++++ V_SORT_DOMEFLAT=
V_SORT_SKYFLAT=
++++ V_SORT_SKYFLAT=
V_SORT_STD=
++++ V_SORT_STD=
V_PRE_XTALK_NOR_CHECKED=0
++++ V_PRE_XTALK_NOR_CHECKED=0
V_PRE_XTALK_ROW_CHECKED=0
++++ V_PRE_XTALK_ROW_CHECKED=0
V_PRE_XTALK_MULTI_CHECKED=0
++++ V_PRE_XTALK_MULTI_CHECKED=0
V_PRE_XTALK_NOR_AMPLITUDE=
++++ V_PRE_XTALK_NOR_AMPLITUDE=
V_PRE_XTALK_ROW_AMPLITUDE=
++++ V_PRE_XTALK_ROW_AMPLITUDE=
V_PRE_XTALK_NOR_BUTTONID=-1
++++ V_PRE_XTALK_NOR_BUTTONID=-1
V_PRE_XTALK_ROW_BUTTONID=-1
++++ V_PRE_XTALK_ROW_BUTTONID=-1
V_PRE_XTALK_MULTI_BUTTONID=-1
++++ V_PRE_XTALK_MULTI_BUTTONID=-1
V_PRE_XTALK_MULTI_NSECTION=
++++ V_PRE_XTALK_MULTI_NSECTION=
V_CAL_OVSCANNLOW=0
++++ V_CAL_OVSCANNLOW=0
V_CAL_OVSCANNHIGH=1
++++ V_CAL_OVSCANNHIGH=1
V_CAL_BIASNLOW=0
++++ V_CAL_BIASNLOW=0
V_CAL_BIASNHIGH=1
++++ V_CAL_BIASNHIGH=1
V_CAL_DARKNLOW=0
++++ V_CAL_DARKNLOW=0
V_CAL_DARKNHIGH=1
++++ V_CAL_DARKNHIGH=1
V_CAL_FLATNLOW=0
++++ V_CAL_FLATNLOW=0
V_CAL_FLATNHIGH=1
++++ V_CAL_FLATNHIGH=1
V_CAL_USEDARK=FALSE
++++ V_CAL_USEDARK=FALSE
V_BACK_NLOW=0
++++ V_BACK_NLOW=0
V_BACK_NHIGH=1
++++ V_BACK_NHIGH=1
V_BACK_DETECTTHRESH=1.3
++++ V_BACK_DETECTTHRESH=1.3
V_BACK_DETECTMINAREA=5
++++ V_BACK_DETECTMINAREA=5
V_BACK_MASKEXPAND=
++++ V_BACK_MASKEXPAND=
V_BACK_ILLUMSMOOTH=
++++ V_BACK_ILLUMSMOOTH=
V_BACK_FRINGESMOOTH=
++++ V_BACK_FRINGESMOOTH=
V_BACK_WINDOWSIZE=0
++++ V_BACK_WINDOWSIZE=0
V_BACK_GAPSIZE=1.0
++++ V_BACK_GAPSIZE=1.0
V_BACK_APPLYMODE=0
++++ V_BACK_APPLYMODE=0
V_BACK_COMBINEMETHOD=0
++++ V_BACK_COMBINEMETHOD=0
V_BACK_SEXFILTER=Y
++++ V_BACK_SEXFILTER=Y
V_BACK_ADJUSTGAINS=N
++++ V_BACK_ADJUSTGAINS=N
V_BACK_FRINGESCALE=Y
++++ V_BACK_FRINGESCALE=Y
V_BACK_SKY2PASS=Y
++++ V_BACK_SKY2PASS=Y
V_COLLDETECTTHRESH=
++++ V_COLLDETECTTHRESH=
V_COLLDETECTMINAREA=
++++ V_COLLDETECTMINAREA=
V_COLLMASKEXPAND=
++++ V_COLLMASKEXPAND=
V_COLLREJECTTHRESH=1.5
++++ V_COLLREJECTTHRESH=1.5
V_COLLDIRECTION=x
++++ V_COLLDIRECTION=x
V_COLLXMIN=
++++ V_COLLXMIN=
V_COLLXMAX=
++++ V_COLLXMAX=
V_COLLYMIN=
++++ V_COLLYMIN=
V_COLLYMAX=
++++ V_COLLYMAX=
V_COLLMASKACTION=1
++++ V_COLLMASKACTION=1
V_COLLAUTOTHRESHOLD=0
++++ V_COLLAUTOTHRESHOLD=0
V_WEIGHTBINMIN=-100
++++ V_WEIGHTBINMIN=-100
V_WEIGHTBINMAX=500
++++ V_WEIGHTBINMAX=500
V_WEIGHTBINSIZE=4
++++ V_WEIGHTBINSIZE=4
V_WEIGHTLOWTHRESHOLD=
++++ V_WEIGHTLOWTHRESHOLD=
V_WEIGHTHIGHTHRESHOLD=
++++ V_WEIGHTHIGHTHRESHOLD=
V_GLOBWFLATMIN=0.5
++++ V_GLOBWFLATMIN=0.5
V_GLOBWFLATMAX=1.6
++++ V_GLOBWFLATMAX=1.6
V_GLOBWDARKMIN=
++++ V_GLOBWDARKMIN=
V_GLOBWDARKMAX=
++++ V_GLOBWDARKMAX=
V_GLOBWDARKDIR=
++++ V_GLOBWDARKDIR=
V_COSMICSTHRESHOLD=0.1
++++ V_COSMICSTHRESHOLD=0.1
V_COSMICDT=6
++++ V_COSMICDT=6
V_COSMICDMIN=1
++++ V_COSMICDMIN=1
V_DEFECT_KERNELSIZE=
++++ V_DEFECT_KERNELSIZE=
V_DEFECT_ROWTOL=
++++ V_DEFECT_ROWTOL=
V_DEFECT_COLTOL=
++++ V_DEFECT_COLTOL=
V_DEFECT_CLUSTOL=
++++ V_DEFECT_CLUSTOL=
V_DEFECT_KERNELSIZE_SF=
++++ V_DEFECT_KERNELSIZE_SF=
V_DEFECT_ROWTOL_SF=
++++ V_DEFECT_ROWTOL_SF=
V_DEFECT_COLTOL_SF=
++++ V_DEFECT_COLTOL_SF=
V_DEFECT_CLUSTOL_SF=
++++ V_DEFECT_CLUSTOL_SF=
V_BLOOMLOWLIMIT=20000
++++ V_BLOOMLOWLIMIT=20000
V_BLOOMMINAREA=100
++++ V_BLOOMMINAREA=100
V_BLOOMWIDTH=0
++++ V_BLOOMWIDTH=0
V_WEIGHT_BINOUTLIER=FALSE
++++ V_WEIGHT_BINOUTLIER=FALSE
V_GLOBW_UNIFORMWEIGHT=FALSE
++++ V_GLOBW_UNIFORMWEIGHT=FALSE
V_MASKBLOOMSPIKE=0
++++ V_MASKBLOOMSPIKE=0
V_AP_DETECTTHRESH=5.0
++++ V_AP_DETECTTHRESH=5.0
V_AP_DETECTMINAREA=5
++++ V_AP_DETECTMINAREA=5
V_DEBLENDMINCONT=0.0005
++++ V_DEBLENDMINCONT=0.0005
V_AP_LOWNUM=1
++++ V_AP_LOWNUM=1
V_SEXCATMINFWHM=1.5
++++ V_SEXCATMINFWHM=1.5
V_SEXCATFLAG=0
++++ V_SEXCATFLAG=0
V_SATURATION=
++++ V_SATURATION=
V_SEXBACKLEVEL=
++++ V_SEXBACKLEVEL=
V_AP_FILTER=N
++++ V_AP_FILTER=N
V_SCAMP_MAXPOSANGLE=2.0
++++ V_SCAMP_MAXPOSANGLE=2.0
V_SCAMP_MAXOFFSET=2.0
++++ V_SCAMP_MAXOFFSET=2.0
V_SCAMP_MAXSCALE=1.05
++++ V_SCAMP_MAXSCALE=1.05
V_SCAMP_SNLOW=5
++++ V_SCAMP_SNLOW=5
V_SCAMP_SNHIGH=20
++++ V_SCAMP_SNHIGH=20
V_SCAMP_FGROUPRADIUS=1.0
++++ V_SCAMP_FGROUPRADIUS=1.0
V_SCAMP_CROSSIDRADIUS=0
++++ V_SCAMP_CROSSIDRADIUS=0
V_SCAMP_ASTREFWEIGHT=1.0
++++ V_SCAMP_ASTREFWEIGHT=1.0
V_SCAMP_ASTRINSTRUKEY=FILTER
++++ V_SCAMP_ASTRINSTRUKEY=FILTER
V_SCAMP_PHOTINSTRUKEY=FILTER
++++ V_SCAMP_PHOTINSTRUKEY=FILTER
V_SCAMP_POLYORDER=3
++++ V_SCAMP_POLYORDER=3
V_SCAMP_POLYORDER2=
++++ V_SCAMP_POLYORDER2=
V_SCAMP_DISTORTGROUPS=
++++ V_SCAMP_DISTORTGROUPS=
V_SCAMP_DISTORTKEYS=
++++ V_SCAMP_DISTORTKEYS=
V_SCAMP_STABILITY=INSTRUMENT
++++ V_SCAMP_STABILITY=INSTRUMENT
V_SCAMP_MOSAICTYPE=UNCHANGED
++++ V_SCAMP_MOSAICTYPE=UNCHANGED
V_SCAMP_FOCALPLANE=DEFAULT
++++ V_SCAMP_FOCALPLANE=DEFAULT
V_SCAMP_MATCHFLIPPED=N
++++ V_SCAMP_MATCHFLIPPED=N
V_SCAMP_MATCHWCS=Y
++++ V_SCAMP_MATCHWCS=Y
V_ANET_MAXSCALE=1.05
++++ V_ANET_MAXSCALE=1.05
V_ANET_POLYORDER=3
++++ V_ANET_POLYORDER=3
V_ANET_SCAMPDISTORT=N
++++ V_ANET_SCAMPDISTORT=N
V_ABSPHOT_FILTER=B
++++ V_ABSPHOT_FILTER=B
V_ABSPHOT_COLORFIXED=0.1
++++ V_ABSPHOT_COLORFIXED=0.1
V_ABSPHOT_EXTINCTION=0
++++ V_ABSPHOT_EXTINCTION=0
V_ABSPHOT_ZPMIN=24
++++ V_ABSPHOT_ZPMIN=24
V_ABSPHOT_ZPMAX=25
++++ V_ABSPHOT_ZPMAX=25
V_ABSPHOT_STDMINMAG=0.0
++++ V_ABSPHOT_STDMINMAG=0.0
V_ABSPHOT_MAXPHOTERR=0.05
++++ V_ABSPHOT_MAXPHOTERR=0.05
V_ABSPHOT_WCSERR=10
++++ V_ABSPHOT_WCSERR=10
V_ABSPHOT_WCSERRCHECKBOX=Y
++++ V_ABSPHOT_WCSERRCHECKBOX=Y
V_ABSPHOT_STDCAT_DIRECT=SDSS
++++ V_ABSPHOT_STDCAT_DIRECT=SDSS
V_ABSPHOT_STDFILTERM2=u
++++ V_ABSPHOT_STDFILTERM2=u
V_ABSPHOT_STDCAT_INDIRECT=LANDOLT_UBVRI
++++ V_ABSPHOT_STDCAT_INDIRECT=LANDOLT_UBVRI
V_ABSPHOT_STDFILTER=U
++++ V_ABSPHOT_STDFILTER=U
V_ABSPHOT_STDCOLOR=UmB
++++ V_ABSPHOT_STDCOLOR=UmB
V_ABSPHOT_CALMODE=RUNCALIB
++++ V_ABSPHOT_CALMODE=RUNCALIB
V_ABSPHOT_FITTINGMETHODM2=CHIP
++++ V_ABSPHOT_FITTINGMETHODM2=CHIP
V_COADD_REFRA=
++++ V_COADD_REFRA=
V_COADD_REFDEC=
++++ V_COADD_REFDEC=
V_COADD_IDENT=(null)
++++ V_COADD_IDENT=(null)
V_COADD_SEEING=
++++ V_COADD_SEEING=
V_COADD_RZP=
++++ V_COADD_RZP=
V_COADD_PIXSCALE=0.89
++++ V_COADD_PIXSCALE=0.89
V_COADD_SIZEX=
++++ V_COADD_SIZEX=
V_COADD_SIZEY=
++++ V_COADD_SIZEY=
V_COADD_SKYPOSANGLE=
++++ V_COADD_SKYPOSANGLE=
V_COADD_CHIPS=""
++++ V_COADD_CHIPS=
V_COADD_FILTERTHRESHOLD=
++++ V_COADD_FILTERTHRESHOLD=
V_COADD_FILTERCLUSTERSIZE=
++++ V_COADD_FILTERCLUSTERSIZE=
V_COADD_FILTERBORDERWIDTH=
++++ V_COADD_FILTERBORDERWIDTH=
V_COADD_SMOOTHEDGE=
++++ V_COADD_SMOOTHEDGE=
V_COADD_PROPMOTIONRA=
++++ V_COADD_PROPMOTIONRA=
V_COADD_PROPMOTIONDEC=
++++ V_COADD_PROPMOTIONDEC=
V_COADD_KERNEL=LANCZOS3
++++ V_COADD_KERNEL=LANCZOS3
V_COADD_FILTER=
++++ V_COADD_FILTER=
V_COADD_PROJECTION=TAN
++++ V_COADD_PROJECTION=TAN
V_COADD_CELESTIALTYPE=EQUATORIAL
++++ V_COADD_CELESTIALTYPE=EQUATORIAL
V_COADD_COMBINETYPE=WEIGHTED
++++ V_COADD_COMBINETYPE=WEIGHTED
. ~/.theli/param_set3.ini
+++ . /home/albireo/.theli/param_set3.ini

# Geographical latitude of the observatory
OBSLAT=
++ OBSLAT=

# Pixel scale in x and y [degrees] (CDELT1/2 keywords)
PIXSCX=-0
++ PIXSCX=-0
PIXSCY=0
++ PIXSCY=0

# Pixel scale in arcsec
PIXSCALE=
++ PIXSCALE=

# Detector gain
GAIN=1.0
++ GAIN=1.0

# Overscan regions. The values are the x-range.
# The min is given by OVSCANX1, the max by OVSCANX2.
# We need separate regions for each chip.

OVSCANX1=([1]=0)
++ OVSCANX1=([1]=0)
OVSCANX2=([1]=0)
++ OVSCANX2=([1]=0)

# Sections for the cutting. Select those pixels that receive light.
# Give min values for x and y, and the extent in x and y.

CUTX=([1]=1)
++ CUTX=([1]=1)
CUTY=([1]=1)
++ CUTY=([1]=1)
SIZEX=([1]=3358)
++ SIZEX=([1]=3358)
SIZEY=([1]=2536)
++ SIZEY=([1]=2536)

# Reference pixels for each chip.

REFPIXX=([1]=100)
++ REFPIXX=([1]=100)
REFPIXY=([1]=100)
++ REFPIXY=([1]=100)

# Camera type
TYPE=OPT
++ TYPE=OPT


#
# the resultdir is where the output coadded images
# will go. If ONE image of the corresponding chip
# is a link the image will go to THIS directory
for CHIP in $3
do
  RESULTDIR[${CHIP}]="$1/$2"
done
+ for CHIP in '$3'
+ RESULTDIR[${CHIP}]=/home/albireo/14-17.02.2015/rgb//dark

. bash.include
+ . bash.include
function get_wcs {

  local k

  k=1
  cd11=""
  cd12=""
  cd21=""
  cd22=""
  cpx1=""
  cpx2=""

  while [ "${k}" -le "${NCHIPS}" ]
  do
    if [ "${NCHIPS}" = "1" ]; then
       ext=0
    else
       ext=${k}
    fi

    # test if the CD matrix is present
    testcd=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CD1_1 | ${P_GAWK} '(NR==2) {print $2}'`
    testcdelt=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CDELT1 | ${P_GAWK} '(NR==2) {print $2}'`
    testcdelt2=`echo ${testcdelt} | ${P_GAWK} '{if ($1>=1) print "bad"; else print "good"}'`
    if [ "${testcd}"_A != "_A" ] && [ "${testcd}" != "KEY_N/A" ]; then
        cdmatrix=`${P_DFITS} -x ${ext} ${FILE} | \
	          ${P_FITSORT} CD1_1 CD1_2 CD2_1 CD2_2 | \
                  ${P_GAWK} '($1!="FILE") {print $2, $3, $4, $5}'`
    else
	if [ "${testcdelt}"_A != "_A" ] && [ "${testcdelt}" != "KEY_N/A" ] && [ "${testcdelt2}" = "good" ] ; then
           cdmatrix=`${P_DFITS} -x ${ext} ${FILE} | \
                  ${P_FITSORT} CDELT1 CDELT2 | \
		  ${P_GAWK} '($1!="FILE") {print $2, "0.0", "0.0", $3}'`
    	else
           cdmatrix="${PIXSCX} 0.0 0.0 ${PIXSCY}"
        fi
    fi

    # test if the reference pixel is present
    testcrpix=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CRPIX1 | ${P_GAWK} '(NR==2) {print $2}'`
    if [ "${testcrpix}"_A != "_A" ] && [ "${testcrpix}" != "KEY_N/A" ]; then
        refpixel=`${P_DFITS} -x ${ext} ${FILE} | \
	          ${P_FITSORT} CRPIX1 CRPIX2 | \
                  ${P_GAWK} '($1!="FILE") {print $2, $3}'`
    else
	rpix1=${REFPIXX[${k}]}
	rpix2=${REFPIXY[${k}]}
	if [ "${rpix1}_A" = "_A" ]; then
	   rpix1=1
	fi	   
	if [ "${rpix2}_A" = "_A" ]; then
	   rpix2=1
	fi   
        refpixel="${rpix1} ${rpix2}"
    fi

    c11=`echo ${cdmatrix} | ${P_GAWK} '{print $1}'`
    c12=`echo ${cdmatrix} | ${P_GAWK} '{print $2}'`
    c21=`echo ${cdmatrix} | ${P_GAWK} '{print $3}'`
    c22=`echo ${cdmatrix} | ${P_GAWK} '{print $4}'`
    cr1=`echo ${refpixel} | ${P_GAWK} '{print $1}'`
    cr2=`echo ${refpixel} | ${P_GAWK} '{print $2}'`
    if [ "${k}" = "1" ]; then
       cd11="${c11}"
       cd12="${c12}"
       cd21="${c21}"
       cd22="${c22}"
       cpx1="${cr1}"
       cpx2="${cr2}"
    else
       cd11="${cd11},${c11}"
       cd12="${cd12},${c12}"
       cd21="${cd21},${c21}"
       cd22="${cd22},${c22}"
       cpx1="${cpx1},${cr1}"
       cpx2="${cpx2},${cr2}"
    fi

    k=$(( $k + 1 ))
  done
}

function get_wcsext {

  local k

  k=1
  cd11=""
  cd12=""
  cd21=""
  cd22=""
  cpx1=""
  cpx2=""

  while [ "${k}" -le "${NCHIPS}" ]
  do
    ext=1

    # test if the CD matrix is present
    testcd=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CD1_1 | ${P_GAWK} '(NR==2) {print $2}'`
    testcdelt=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CDELT1 | ${P_GAWK} '(NR==2) {print $2}'`
    testcdelt2=`echo ${testcdelt} | ${P_GAWK} '{if ($1>=1) print "bad"; else print "good"}'`
    if [ "${testcd}"_A != "_A" ] && [ "${testcd}" != "KEY_N/A" ]; then
        cdmatrix=`${P_DFITS} -x ${ext} ${FILE} | \
	          ${P_FITSORT} CD1_1 CD1_2 CD2_1 CD2_2 | \
                  ${P_GAWK} '($1!="FILE") {print $2, $3, $4, $5}'`
    else
	if [ "${testcdelt}"_A != "_A" ] && [ "${testcdelt}" != "KEY_N/A" ] && [ "${testcdelt2}" = "good" ] ; then
           cdmatrix=`${P_DFITS} -x ${ext} ${FILE} | \
                  ${P_FITSORT} CDELT1 CDELT2 | \
		  ${P_GAWK} '($1!="FILE") {print $2, "0.0", "0.0", $3}'`
    	else
           cdmatrix="${PIXSCX} 0.0 0.0 ${PIXSCY}"
        fi
    fi

    # test if the reference pixel is present
    testcrpix=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CRPIX1 | ${P_GAWK} '(NR==2) {print $2}'`
    if [ "${testcrpix}"_A != "_A" ] && [ "${testcrpix}" != "KEY_N/A" ]; then
        refpixel=`${P_DFITS} -x ${ext} ${FILE} | \
	          ${P_FITSORT} CRPIX1 CRPIX2 | \
                  ${P_GAWK} '($1!="FILE") {print $2, $3}'`
    else
	rpix1=${REFPIXX[${k}]}
	rpix2=${REFPIXY[${k}]}
	if [ "${rpix1}_A" = "_A" ]; then
	   rpix1=1
	fi	   
	if [ "${rpix2}_A" = "_A" ]; then
	   rpix2=1
	fi   
        refpixel="${rpix1} ${rpix2}"
    fi

    c11=`echo ${cdmatrix} | ${P_GAWK} '{print $1}'`
    c12=`echo ${cdmatrix} | ${P_GAWK} '{print $2}'`
    c21=`echo ${cdmatrix} | ${P_GAWK} '{print $3}'`
    c22=`echo ${cdmatrix} | ${P_GAWK} '{print $4}'`
    cr1=`echo ${refpixel} | ${P_GAWK} '{print $1}'`
    cr2=`echo ${refpixel} | ${P_GAWK} '{print $2}'`
    if [ "${k}" = "1" ]; then
       cd11="${c11}"
       cd12="${c12}"
       cd21="${c21}"
       cd22="${c22}"
       cpx1="${cr1}"
       cpx2="${cr2}"
    else
       cd11="${cd11},${c11}"
       cd12="${cd12},${c12}"
       cd21="${cd21},${c21}"
       cd22="${cd22},${c22}"
       cpx1="${cpx1},${cr1}"
       cpx2="${cpx2},${cr2}"
    fi

    k=$(( $k + 1 ))
  done
}



function get_statminsection {
	 
  local xmin
  local ymin
  local xmax
  local ymax

  if  [ "${STATXMIN[${CHIP}]}"_A != "_A" ] && \
      [ "${STATXMAX[${CHIP}]}"_A != "_A" ] && \
      [ "${STATYMIN[${CHIP}]}"_A != "_A" ] && \
      [ "${STATYMAX[${CHIP}]}"_A != "_A" ]; then
      xmin=${STATXMIN[${CHIP}]}
      xmax=${STATXMAX[${CHIP}]}
      ymin=${STATYMIN[${CHIP}]}
      ymax=${STATYMAX[${CHIP}]}
  else
    k=1
    statminsection=""
    xmax=${SIZEX[1]}
    ymax=${SIZEY[1]}

    while [ "${k}" -le "${NCHIPS}" ]
    do
	if [ ${SIZEX[k]} -lt ${xmax} ]; then
       	    xmax=${SIZEX[k]}
    	fi
    	if [ ${SIZEY[k]} -lt ${ymax} ]; then
       	    ymax=${SIZEY[k]}
        fi
        k=$((${k}+1))
    done
    
    xmin=2
    ymin=2
    xmax=$((${xmax}-1))
    ymax=$((${ymax}-1))
  fi

  statminsection="${xmin},${xmax},${ymin},${ymax}"
}


function p_ls {
  ls -l | grep ^- | ${P_GAWK} '{print $NF}'
}

# the following extracts keywords;
# leading and trailing whitespace is removed (2nd call to gawk)
# and blanks inside the keyword value are replaced with underscores (e.g. for OBJECT keyword)
function get_key {
  ${P_DFITS} $1 | ${P_FITSORT} -d "$2" | ${P_GAWK} 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}' | ${P_GAWK} '{$1=$1}1' | sed 's/ /_/g'
}

function get_keyext {
  ${P_DFITS} -x 1 $1 | ${P_FITSORT} -d "$2" | ${P_GAWK} '{if ($2!="KEY_N/A") print $2}'
}

function get_region {
  # merge global and local region files if they exist
  regionfile=""
  region=""

  test -f ${TEMPDIR}/regionfile_${CHIP}.reg && rm ${TEMPDIR}/regionfile_${CHIP}.reg 

  if [ -f ${INSTDIR}/${INSTRUMENT}.reg ]; then
  	cat ${INSTDIR}/${INSTRUMENT}.reg >> \
  	    ${TEMPDIR}/regionfile_${CHIP}.reg
  	regionfile="${TEMPDIR}/regionfile_${CHIP}.reg"
	region="-d ${regionfile}"
  fi
  if [ -f ${INSTDIR}/${INSTRUMENT}_${CHIP}.reg ]; then
  	cat ${INSTDIR}/${INSTRUMENT}_${CHIP}.reg >> \
  	    ${TEMPDIR}/regionfile_${CHIP}.reg
  	regionfile="${TEMPDIR}/regionfile_${CHIP}.reg"
	region="-d ${regionfile}"
  fi
}

function get_region_chip {
  # merge global and local region files if they exist
  # for a different chip than the currently processed one 
  # (constant sky subtraction)
  regionfile=""
  region=""

  test -f ${TEMPDIR}/regionfile_$1.reg_$$ && rm ${TEMPDIR}/regionfile_$1.reg_$$

  if [ -f ${INSTDIR}/${INSTRUMENT}.reg ]; then
  	cat ${INSTDIR}/${INSTRUMENT}.reg >> \
  	    ${TEMPDIR}/regionfile_$1.reg_$$
  	regionfile="${TEMPDIR}/regionfile_$1.reg_$$"
	region="-d ${regionfile}"
  fi
  if [ -f ${INSTDIR}/${INSTRUMENT}_$1.reg ]; then
  	cat ${INSTDIR}/${INSTRUMENT}_$1.reg >> \
  	    ${TEMPDIR}/regionfile_$1.reg_$$
  	regionfile="${TEMPDIR}/regionfile_$1.reg_$$"
	region="-d ${regionfile}"
  fi
}

function prepare_sex_for_region {
  backstring=""
  weightstring=""
  if [ -f ${regionfile} ] && [ "${regionfile}_A" != "_A" ]; then
      # estimate the background, ignoring blanked pixels
      background=`${P_FITSSTAT} -i ${FILE} -m median -q`
      backstring="-BACK_TYPE MANUAL -BACK_VALUE ${background}"
      weightstring="-WEIGHT_TYPE MAP_WEIGHT -WEIGHT_IMAGE /$1/WEIGHTS/globalweight_dummy_${CHIP}.fits"

      # check if the dummy weight exists
      if [ ! -e /$1/WEIGHTS/globalweight_dummy_${CHIP}.fits ]; then
	  mkdir -p /$1/WEIGHTS/
	  ${P_IC} -p -32 -c ${SIZEX[${CHIP}]} ${SIZEY[${CHIP}]} '1' > ${TEMPDIR}/dummy_${CHIP}.fits
	  ${P_FITSPOLYGON} -i ${TEMPDIR}/dummy_${CHIP}.fits -p ${regionfile} \
	      -o /$1/WEIGHTS/globalweight_dummy_${CHIP}.fits
	  rm ${TEMPDIR}/dummy_${CHIP}.fits
      fi
  fi
}


function prepare_imred_for_backgroundmodel {
  # The relevant settings depending on the apply mode of the background model
  flatstring=""
  fringestring=""

  ####################################################
  # subtract background model
  ####################################################
  if [ "${V_BACK_APPLYMODE}" -eq 0 ]; then
      fringestring="-FLAT N -FRINGE Y -FRINGE_SCALE ${V_BACK_FRINGESCALE}"
      if [ "${V_BACK_ILLUMSMOOTH}"_A != "_A" ]; then
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}_illum.fits
      else
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}.fits
      fi
      fringestring="${fringestring} -FRINGE_IMAGE ${FRINGEIMAGE} -FRINGE_REFIMAGE ${FRINGEIMAGE}"
  fi

  ####################################################
  # divide background model
  ####################################################
  if [ "${V_BACK_APPLYMODE}" -eq 1 ]; then
      flatstring="-FRINGE N -FLAT Y -FLAT_THRESHHOLD 0.1 -FLAT_SCALE ${V_BACK_ADJUSTGAINS}"
      if [ "${V_BACK_ILLUMSMOOTH}"_A != "_A" ]; then
	  FLATIMAGE=/$1/$2/$2_${CHIP}_illum.fits
      else
	  FLATIMAGE=/$1/$2/$2_${CHIP}.fits
      fi
      flatstring="${flatstring} -FLAT_IMAGE ${FLATIMAGE} -FLAT_SCALEIMAGE ${FLATIMAGE}"
  fi

  ####################################################
  # subtract fringing model
  ####################################################
  if [ "${V_BACK_APPLYMODE}" -eq 2 ]; then
      fringestring="-FRINGE Y -FRINGE_SCALE ${V_BACK_FRINGESCALE}"
      if [ "${V_BACK_FRINGESMOOTH}"_A != "_A" ]; then
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}_fringe_smooth.fits
      else
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}_fringe.fits
      fi
      fringestring="${fringestring} -FRINGE_IMAGE ${FRINGEIMAGE} -FRINGE_REFIMAGE /$1/$2/$2_${CHIP}_illum.fits"
  fi

  ####################################################
  # divide background model, subtract fringing model
  ####################################################
  if [ "${V_BACK_APPLYMODE}" -eq 3 ]; then
      flatstring="-FLAT Y -FLAT_THRESHHOLD 0.1 -FLAT_SCALE ${V_BACK_ADJUSTGAINS}"
      if [ "${V_BACK_ILLUMSMOOTH}"_A != "_A" ]; then
	  FLATIMAGE=/$1/$2/$2_${CHIP}_illum.fits
      else
	  FLATIMAGE=/$1/$2/$2_${CHIP}.fits
      fi
      flatstring="${flatstring} -FLAT_IMAGE ${FLATIMAGE} -FLAT_SCALEIMAGE ${FLATIMAGE}"

      fringestring="-FRINGE Y -FRINGE_SCALE ${V_BACK_FRINGESCALE}"
      if [ "${V_BACK_FRINGESMOOTH}"_A != "_A" ]; then
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}_fringe_smooth.fits
      else
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}_fringe.fits
      fi
      fringestring="${fringestring} -FRINGE_IMAGE ${FRINGEIMAGE} -FRINGE_REFIMAGE /$1/$2/$2_${CHIP}_illum.fits"
  fi

}

for CHIP in $3
do

# check whether the master calibration file
# exists already. if yes, then delete it.

  test -f $1/$2/$2_${CHIP}.fits && rm $1/$2/$2_${CHIP}.fits

  FILES=`ls $1/$2/*_${CHIP}.fits`

  image=`ls $1/$2/*_${CHIP}.fits | ${P_GAWK} '(NR==1)'`
  EXPTIME=`get_key ${image} EXPTIME`

  for FILE in ${FILES}
  do
        if [ -L ${FILE} ]; then
          LINK=`${P_READLINK} ${FILE}`
          BASE=`basename ${LINK} .fits`
          DIR=`dirname ${LINK}`
          ln -s ${DIR}/${BASE}OC.fits $1/$2/${BASE}OC.fits
          RESULTDIR[${CHIP}]=`dirname ${LINK}`
        fi
  done

  MAXX=$(( ${CUTX[${CHIP}]} + ${SIZEX[${CHIP}]} - 1 ))
  MAXY=$(( ${CUTY[${CHIP}]} + ${SIZEY[${CHIP}]} - 1 ))

  do_overscan=Y
  if [ "${OVSCANX1[${CHIP}]}" = "0" ] && \
      [ "${OVSCANX2[${CHIP}]}" = "0" ]; then
      do_overscan=N
  fi

  # check the number of exposures
  numexp=`ls $1/$2/*_${CHIP}.fits | wc | ${P_GAWK} '{print $1}'`

  # if less than 3 exposures are available:
  if [ "${numexp}" -lt 3 ]; then
      echo PREPROCESS_FAILURE: Need at least three images of chip ${CHIP} to create master dark
      continue
  fi

  # if numexp <= NFRAMES combine the images right away,
  # otherwise write them down and then combine them.

  xmin=2
  xmax=$(( ${SIZEX[${CHIP}]}-1 ))
  ymin=2
  ymax=$(( ${SIZEY[${CHIP}]}-1 ))

  if [ "${numexp}" -gt "${NFRAMES}" ]; then
  # overscan correct and trim DARK frames
      ${P_IMRED_ECL:?} `ls $1/$2/*_${CHIP}.fits` \
	  -c ${CONF}/imred.conf \
	  -MAXIMAGES ${NFRAMES} \
	  -OVERSCAN ${do_overscan} \
	  -OVERSCAN_REGION ${OVSCANX1[${CHIP}]},${OVSCANX2[${CHIP}]} \
	  -OVERSCAN_REJECT ${V_CAL_OVSCANNLOW},${V_CAL_OVSCANNHIGH} \
	  -OUTPUT Y \
	  -OUTPUT_DIR ${RESULTDIR[${CHIP}]}/ \
	  -TRIM Y \
	  -OUTPUT_SUFFIX OC.fits \
	  -TRIM_REGION ${CUTX[${CHIP}]},${MAXX},${CUTY[${CHIP}]},${MAXY} \
	  -STATSSEC ${xmin},${xmax},${ymin},${ymax}
      
  # and combine them
      ls -1 $1/$2/*_${CHIP}OC.fits > ${TEMPDIR}/dark_images_$$
      ${P_IMCOMBFLAT_IMCAT} -i ${TEMPDIR}/dark_images_$$\
	  -o ${RESULTDIR[${CHIP}]}/$2_${CHIP}.fits \
	  -e ${V_CAL_DARKNLOW} ${V_CAL_DARKNHIGH} 
  fi

  if [ "${numexp}" -le "${NFRAMES}" ]; then
  # overscan correct and trim DARK frames
      ${P_IMRED_ECL:?} `ls $1/$2/*_${CHIP}.fits` \
	  -c ${CONF}/imred.conf \
	  -MAXIMAGES ${NFRAMES} \
	  -OVERSCAN ${do_overscan} \
	  -OVERSCAN_REGION ${OVSCANX1[${CHIP}]},${OVSCANX2[${CHIP}]} \
	  -OVERSCAN_REJECT ${V_CAL_OVSCANNLOW},${V_CAL_OVSCANNHIGH} \
	  -OUTPUT N \
	  -OUTPUT_DIR ${RESULTDIR[${CHIP}]}/ \
	  -TRIM Y \
	  -OUTPUT_SUFFIX OC.fits \
	  -TRIM_REGION ${CUTX[${CHIP}]},${MAXX},${CUTY[${CHIP}]},${MAXY} \
	  -STATSSEC ${xmin},${xmax},${ymin},${ymax} \
	  -COMBINE Y \
	  -COMBINE_MAXVAL 1e8 \
	  -COMBINE_RESCALE N \
	  -COMBINE_OUTPUT ${RESULTDIR[${CHIP}]}/$2_${CHIP}.fits \
	  -COMBINE_REJECT ${V_CAL_DARKNLOW},${V_CAL_DARKNHIGH} 
  fi

  MD5KEY=`get_key ${RESULTDIR[${CHIP}]}/$2_${CHIP}.fits DATAMD5`
  if [ "${MD5KEY}"_A != "_A" ]; then
      ${P_REPLACEKEY} ${RESULTDIR[${CHIP}]}/$2_${CHIP}.fits "EXPTIME = ${EXPTIME}" "DATAMD5"
  else
      ${P_FITSADDKEY} -i ${RESULTDIR[${CHIP}]}/$2_${CHIP}.fits -k EXPTIME -v ${EXPTIME}
  fi

  if [ "${RESULTDIR[${CHIP}]}" != "$1/$2" ]; then
    ln -s ${RESULTDIR[${CHIP}]}/$2_${CHIP}.fits $1/$2/$2_${CHIP}.fits
  fi

  \rm -f /$1/$2/*_${CHIP}OC.fits
  if [ "${RESULTDIR[${CHIP}]}" != "$1/$2" ]; then
    \rm -f ${RESULTDIR[${CHIP}]}/*_${CHIP}OC.fits
  fi  

done
+ for CHIP in '$3'
+ test -f /home/albireo/14-17.02.2015/rgb//dark/dark_1.fits
ls $1/$2/*_${CHIP}.fits
++ ls /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0000_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0001_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0002_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0003_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0004_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0005_1.fits
+ FILES='/home/albireo/14-17.02.2015/rgb//dark/dark600sek_0000_1.fits
/home/albireo/14-17.02.2015/rgb//dark/dark600sek_0001_1.fits
/home/albireo/14-17.02.2015/rgb//dark/dark600sek_0002_1.fits
/home/albireo/14-17.02.2015/rgb//dark/dark600sek_0003_1.fits
/home/albireo/14-17.02.2015/rgb//dark/dark600sek_0004_1.fits
/home/albireo/14-17.02.2015/rgb//dark/dark600sek_0005_1.fits'
ls $1/$2/*_${CHIP}.fits | ${P_GAWK} '(NR==1)'
++ /usr/bin/gawk '(NR==1)'
++ ls /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0000_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0001_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0002_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0003_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0004_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0005_1.fits
+ image=/home/albireo/14-17.02.2015/rgb//dark/dark600sek_0000_1.fits
get_key ${image} EXPTIME
++ get_key /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0000_1.fits EXPTIME
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0000_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d EXPTIME
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ /usr/bin/gawk '{$1=$1}1'
++ sed 's/ /_/g'
+ EXPTIME=600.00
+ for FILE in '${FILES}'
+ '[' -L /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0000_1.fits ']'
+ for FILE in '${FILES}'
+ '[' -L /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0001_1.fits ']'
+ for FILE in '${FILES}'
+ '[' -L /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0002_1.fits ']'
+ for FILE in '${FILES}'
+ '[' -L /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0003_1.fits ']'
+ for FILE in '${FILES}'
+ '[' -L /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0004_1.fits ']'
+ for FILE in '${FILES}'
+ '[' -L /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0005_1.fits ']'
+ MAXX=3358
+ MAXY=2536
+ do_overscan=Y
+ '[' 0 = 0 ']'
+ '[' 0 = 0 ']'
+ do_overscan=N
ls $1/$2/*_${CHIP}.fits | wc | ${P_GAWK} '{print $1}'
++ wc
++ /usr/bin/gawk '{print $1}'
++ ls /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0000_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0001_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0002_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0003_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0004_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0005_1.fits
+ numexp=6
+ '[' 6 -lt 3 ']'
+ xmin=2
+ xmax=3357
+ ymin=2
+ ymax=2535
+ '[' 6 -gt 47 ']'
+ '[' 6 -le 47 ']'
ls $1/$2/*_${CHIP}.fits
++ ls /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0000_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0001_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0002_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0003_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0004_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0005_1.fits
+ /home/albireo/THELI/theli//bin/Linux_64//preprocess /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0000_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0001_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0002_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0003_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0004_1.fits /home/albireo/14-17.02.2015/rgb//dark/dark600sek_0005_1.fits -c /home/albireo/THELI/theli//gui/reduction/imred.conf -MAXIMAGES 47 -OVERSCAN N -OVERSCAN_REGION 0,0 -OVERSCAN_REJECT 0,1 -OUTPUT N -OUTPUT_DIR /home/albireo/14-17.02.2015/rgb//dark/ -TRIM Y -OUTPUT_SUFFIX OC.fits -TRIM_REGION 1,3358,1,2536 -STATSSEC 2,3357,2,2535 -COMBINE Y -COMBINE_MAXVAL 1e8 -COMBINE_RESCALE N -COMBINE_OUTPUT /home/albireo/14-17.02.2015/rgb//dark/dark_1.fits -COMBINE_REJECT 0,1
-> Part 1: Preliminary work:
-> Part 2: performing run processing
	-> 2.1: loading input images for run 1

	loading framelist...: 1 out of 6 
	loading framelist...: 2 out of 6 
	loading framelist...: 3 out of 6 
	loading framelist...: 4 out of 6 
	loading framelist...: 5 out of 6 
	loading framelist...: 6 out of 6 
	-> 2.2: trimming images
-> Part 3: stacking cube without rescaling
get_key ${RESULTDIR[${CHIP}]}/$2_${CHIP}.fits DATAMD5
++ get_key /home/albireo/14-17.02.2015/rgb//dark/dark_1.fits DATAMD5
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//dark/dark_1.fits
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d DATAMD5
++ sed 's/ /_/g'
++ /usr/bin/gawk '{$1=$1}1'
+ MD5KEY=6a8dfba3ee01a449348dc51dc1966c20
+ '[' 6a8dfba3ee01a449348dc51dc1966c20_A '!=' _A ']'
+ /home/albireo/THELI/theli//bin/Linux_64//replacekey /home/albireo/14-17.02.2015/rgb//dark/dark_1.fits 'EXPTIME = 600.00' DATAMD5
+ '[' /home/albireo/14-17.02.2015/rgb//dark '!=' /home/albireo/14-17.02.2015/rgb//dark ']'
+ rm -f '//home/albireo/14-17.02.2015/rgb//dark/*_1OC.fits'
+ '[' /home/albireo/14-17.02.2015/rgb//dark '!=' /home/albireo/14-17.02.2015/rgb//dark ']'
#!/bin/bash -xv

# the script processes a set of FLAT frames
# the images are overscan corrected, debiased and stacked with
# mode rescaling.

#$1: main directory (filter)
#$2: Bias directory
#$3: Flat directory
#$4: chips to process

# preliminary work:
INSTDIR=instruments_professional
+ INSTDIR=instruments_professional
if [ ! -f ${INSTDIR}/${INSTRUMENT}.ini ]; then
    INSTDIR=instruments_commercial
fi
+ '[' '!' -f instruments_professional/Moravian10z.ini ']'
+ INSTDIR=instruments_commercial
if [ ! -f ${INSTDIR}/${INSTRUMENT}.ini ]; then
    INSTDIR=~/.theli/instruments_user/
fi
+ '[' '!' -f instruments_commercial/Moravian10z.ini ']'
+ INSTDIR=/home/albireo/.theli/instruments_user/
. ${INSTDIR}/${INSTRUMENT:?}.ini
+ . /home/albireo/.theli/instruments_user//Moravian10z.ini
# **************************************************************
#            Instrument config file created by THELI
# **************************************************************

# Name of the instrument (must be unique!)
INSTRUMENT=Moravian10z
++ INSTRUMENT=Moravian10z

# Number of chips
NCHIPS=1
++ NCHIPS=1

# We need to export these
export INSTRUMENT
++ export INSTRUMENT
export NCHIPS
++ export NCHIPS

# Load directories for programs
. progs.ini
++ . progs.ini
# If we include this script in bash verbose and trace mode we do not want
# all the (verbose) output from this script:
USE_X=0
+++ USE_X=0
if  [[ ${-/x} != $- ]] ; then
  USE_X=1
  set +xv
fi
+++ [[ hvB != hvxB ]]
+++ USE_X=1
+++ set +xv
#
# this is needed for the GUI
#
P_PIPELIBS=/home/albireo/THELI/PipeLibs//pipe.csh
+++ P_PIPELIBS=/home/albireo/THELI/PipeLibs//pipe.csh
P_GETPMMOBJECTS=${BIN}/get_pmm_objects
+++ P_GETPMMOBJECTS=/home/albireo/THELI/theli//bin/Linux_64//get_pmm_objects
P_LDACDESC=${BIN}/ldacdesc
+++ P_LDACDESC=/home/albireo/THELI/theli//bin/Linux_64//ldacdesc
P_LDACDELTAB=${BIN}/ldacdeltab
+++ P_LDACDELTAB=/home/albireo/THELI/theli//bin/Linux_64//ldacdeltab
P_LDACDELKEY=${BIN}/ldacdelkey
+++ P_LDACDELKEY=/home/albireo/THELI/theli//bin/Linux_64//ldacdelkey
P_LDACPUTXY=${BIN}/ldacputxy
+++ P_LDACPUTXY=/home/albireo/THELI/theli//bin/Linux_64//ldacputxy
P_FITSFLIP=${BIN}/fitsflip
+++ P_FITSFLIP=/home/albireo/THELI/theli//bin/Linux_64//fitsflip
P_DEBLOOM=${BIN}/debloom
+++ P_DEBLOOM=/home/albireo/THELI/theli//bin/Linux_64//debloom
P_EQUALISEBAYERFLAT=${BIN}/equalisebayerflat
+++ P_EQUALISEBAYERFLAT=/home/albireo/THELI/theli//bin/Linux_64//equalisebayerflat
P_FITSCOLLAPSE=${BIN}/fitscollapse
+++ P_FITSCOLLAPSE=/home/albireo/THELI/theli//bin/Linux_64//fitscollapse
P_FITSWRAP=${BIN}/fitswrap
+++ P_FITSWRAP=/home/albireo/THELI/theli//bin/Linux_64//fitswrap
P_FITSCUBESLICE=${BIN}/fitscubeslice
+++ P_FITSCUBESLICE=/home/albireo/THELI/theli//bin/Linux_64//fitscubeslice
P_FITSADDKEY=${BIN}/fitsaddkey
+++ P_FITSADDKEY=/home/albireo/THELI/theli//bin/Linux_64//fitsaddkey
P_FITSCUT=${BIN}/fitscut
+++ P_FITSCUT=/home/albireo/THELI/theli//bin/Linux_64//fitscut
P_FITSBIN=${BIN}/fitsbin
+++ P_FITSBIN=/home/albireo/THELI/theli//bin/Linux_64//fitsbin
P_FITSBLOOMDETECT=${BIN}/fitsbloomdetect
+++ P_FITSBLOOMDETECT=/home/albireo/THELI/theli//bin/Linux_64//fitsbloomdetect
P_FITSFILL=${BIN}/fitsfill
+++ P_FITSFILL=/home/albireo/THELI/theli//bin/Linux_64//fitsfill
P_FITSGRAD=${BIN}/fitsgrad
+++ P_FITSGRAD=/home/albireo/THELI/theli//bin/Linux_64//fitsgrad
P_FITSDEMOSAICBAYER=${BIN}/fitsdemosaicbayer
+++ P_FITSDEMOSAICBAYER=/home/albireo/THELI/theli//bin/Linux_64//fitsdemosaicbayer
P_FITS3MAX=${BIN}/fits3max
+++ P_FITS3MAX=/home/albireo/THELI/theli//bin/Linux_64//fits3max
P_FITSGAUSS=${BIN}/fitsgauss
+++ P_FITSGAUSS=/home/albireo/THELI/theli//bin/Linux_64//fitsgauss
P_FITS2TIFF=${BIN}/fits2tiff
+++ P_FITS2TIFF=/home/albireo/THELI/theli//bin/Linux_64//fits2tiff
P_TIFF2FITS=${BIN}/tiff2fits
+++ P_TIFF2FITS=/home/albireo/THELI/theli//bin/Linux_64//tiff2fits
P_CORRLIRIS=${BIN}/corrliris
+++ P_CORRLIRIS=/home/albireo/THELI/theli//bin/Linux_64//corrliris
P_CROSSTALK=${BIN}/crosstalk
+++ P_CROSSTALK=/home/albireo/THELI/theli//bin/Linux_64//crosstalk
P_FINDGSC=${BIN}/findgsc
+++ P_FINDGSC=/home/albireo/THELI/theli//bin/Linux_64//findgsc
P_FINDUSNOB1=${BIN}/findusnob1
+++ P_FINDUSNOB1=/home/albireo/THELI/theli//bin/Linux_64//findusnob1
P_FIND2MASS=${BIN}/find2mass
+++ P_FIND2MASS=/home/albireo/THELI/theli//bin/Linux_64//find2mass
P_FINDSDSS7=${BIN}/findsdss7
+++ P_FINDSDSS7=/home/albireo/THELI/theli//bin/Linux_64//findsdss7
P_FINDUCAC3=${BIN}/finducac3
+++ P_FINDUCAC3=/home/albireo/THELI/theli//bin/Linux_64//finducac3
P_FINDNOMAD1=${BIN}/findnomad1
+++ P_FINDNOMAD1=/home/albireo/THELI/theli//bin/Linux_64//findnomad1
P_VIZQUERY=${BIN}/vizquery
+++ P_VIZQUERY=/home/albireo/THELI/theli//bin/Linux_64//vizquery
P_SESAME=${BIN}/sesame
+++ P_SESAME=/home/albireo/THELI/theli//bin/Linux_64//sesame
P_ACLIENT=${BIN}/aclient
+++ P_ACLIENT=/home/albireo/THELI/theli//bin/Linux_64//aclient
P_SCAMP=${BIN}/scamp
+++ P_SCAMP=/home/albireo/THELI/theli//bin/Linux_64//scamp
P_RENAME=${BIN}/rename
+++ P_RENAME=/home/albireo/THELI/theli//bin/Linux_64//rename
P_MISSFITS=${BIN}/missfits
+++ P_MISSFITS=/home/albireo/THELI/theli//bin/Linux_64//missfits
P_SWARPFILTER=${BIN}/swarpfilter
+++ P_SWARPFILTER=/home/albireo/THELI/theli//bin/Linux_64//swarpfilter
P_FITSBLOCKEDIT=${BIN}/fitsblockedit
+++ P_FITSBLOCKEDIT=/home/albireo/THELI/theli//bin/Linux_64//fitsblockedit
P_FITSMASK=${BIN}/fitsmask
+++ P_FITSMASK=/home/albireo/THELI/theli//bin/Linux_64//fitsmask
P_FITSMEDIAN=${BIN}/fitsmedian
+++ P_FITSMEDIAN=/home/albireo/THELI/theli//bin/Linux_64//fitsmedian
P_FITSNANMASK=${BIN}/fitsnanmask
+++ P_FITSNANMASK=/home/albireo/THELI/theli//bin/Linux_64//fitsnanmask
P_FITSSTAT=${BIN}/fitsstat
+++ P_FITSSTAT=/home/albireo/THELI/theli//bin/Linux_64//fitsstat
P_FITSSPLITBAYER=${BIN}/fitssplitbayer
+++ P_FITSSPLITBAYER=/home/albireo/THELI/theli//bin/Linux_64//fitssplitbayer
P_FITSGUESSGEOM=${BIN}/fitsguessgeom
+++ P_FITSGUESSGEOM=/home/albireo/THELI/theli//bin/Linux_64//fitsguessgeom
P_SPLITSUPRIMECAM=${BIN}/splitsuprimecam
+++ P_SPLITSUPRIMECAM=/home/albireo/THELI/theli//bin/Linux_64//splitsuprimecam
P_PASTEDUALCHANNEL=${BIN}/paste_dualchannel
+++ P_PASTEDUALCHANNEL=/home/albireo/THELI/theli//bin/Linux_64//paste_dualchannel
P_PASTEQUADCHANNEL=${BIN}/paste_quadchannel
+++ P_PASTEQUADCHANNEL=/home/albireo/THELI/theli//bin/Linux_64//paste_quadchannel
P_SPLITGMOSMULTIPORT=${BIN}/split_gmos_multiport
+++ P_SPLITGMOSMULTIPORT=/home/albireo/THELI/theli//bin/Linux_64//split_gmos_multiport
P_SPLITGROND=${BIN}/split_grond
+++ P_SPLITGROND=/home/albireo/THELI/theli//bin/Linux_64//split_grond
P_GETSHIFT=${BIN}/get_shift
+++ P_GETSHIFT=/home/albireo/THELI/theli//bin/Linux_64//get_shift
P_FITSNONLINEARITY=${BIN}/fitsnonlinearity
+++ P_FITSNONLINEARITY=/home/albireo/THELI/theli//bin/Linux_64//fitsnonlinearity
P_FITSPIC=${BIN}/fitspic
+++ P_FITSPIC=/home/albireo/THELI/theli//bin/Linux_64//fitspic
P_FITSPOLYGON=${BIN}/fitspolygon
+++ P_FITSPOLYGON=/home/albireo/THELI/theli//bin/Linux_64//fitspolygon
P_EXPANDSEXMASK=${BIN}/expand_sexmask
+++ P_EXPANDSEXMASK=/home/albireo/THELI/theli//bin/Linux_64//expand_sexmask
P_DCRAW=${BIN}/dcraw
+++ P_DCRAW=/home/albireo/THELI/theli//bin/Linux_64//dcraw
P_DECSEXCONV=${BIN}/decsexconv
+++ P_DECSEXCONV=/home/albireo/THELI/theli//bin/Linux_64//decsexconv
P_STIFF=${BIN}/stiff
+++ P_STIFF=/home/albireo/THELI/theli//bin/Linux_64//stiff
P_SUBSKY=${BIN}/subsky
+++ P_SUBSKY=/home/albireo/THELI/theli//bin/Linux_64//subsky
P_GIFSICLE=${BIN}/gifsicle
+++ P_GIFSICLE=/home/albireo/THELI/theli//bin/Linux_64//gifsicle
P_XY2SKY=${BIN}/xy2sky
+++ P_XY2SKY=/home/albireo/THELI/theli//bin/Linux_64//xy2sky
P_SKY2XY=${BIN}/sky2xy
+++ P_SKY2XY=/home/albireo/THELI/theli//bin/Linux_64//sky2xy
P_ISFITS=${BIN}/isfits
+++ P_ISFITS=/home/albireo/THELI/theli//bin/Linux_64//isfits
P_GETKEY=${BIN}/getkey
+++ P_GETKEY=/home/albireo/THELI/theli//bin/Linux_64//getkey
P_SKY2XY_HELPER=${BIN}/sky2xy_helper
+++ P_SKY2XY_HELPER=/home/albireo/THELI/theli//bin/Linux_64//sky2xy_helper
P_GET_ROTIMSIZE=${BIN}/get_rotimsize
+++ P_GET_ROTIMSIZE=/home/albireo/THELI/theli//bin/Linux_64//get_rotimsize
P_CLEANSTRING=${BIN}/cleanstring
+++ P_CLEANSTRING=/home/albireo/THELI/theli//bin/Linux_64//cleanstring
P_NUMCPU=${BIN}/numcpu
+++ P_NUMCPU=/home/albireo/THELI/theli//bin/Linux_64//numcpu
P_GETSTATS=${BIN}/getstats
+++ P_GETSTATS=/home/albireo/THELI/theli//bin/Linux_64//getstats
P_CDELT2CD=${BIN}/cdelt2cd
+++ P_CDELT2CD=/home/albireo/THELI/theli//bin/Linux_64//cdelt2cd
P_GETCDMATRIX=${BIN}/get_cdmatrix
+++ P_GETCDMATRIX=/home/albireo/THELI/theli//bin/Linux_64//get_cdmatrix
P_GETPIXSCALE=${BIN}/get_pixscale
+++ P_GETPIXSCALE=/home/albireo/THELI/theli//bin/Linux_64//get_pixscale
P_GETPOSANGLE=${BIN}/get_posangle
+++ P_GETPOSANGLE=/home/albireo/THELI/theli//bin/Linux_64//get_posangle
P_GETREFCATRADIUS=${BIN}/get_refcat_radius
+++ P_GETREFCATRADIUS=/home/albireo/THELI/theli//bin/Linux_64//get_refcat_radius
P_MERGEDAT=${BIN}/mergedat
+++ P_MERGEDAT=/home/albireo/THELI/theli//bin/Linux_64//mergedat
P_ROTATECDMATRIX=${BIN}/rotate_cdmatrix
+++ P_ROTATECDMATRIX=/home/albireo/THELI/theli//bin/Linux_64//rotate_cdmatrix
P_BACKGROUNDDYNAMIC=${BIN}/background_dynamic
+++ P_BACKGROUNDDYNAMIC=/home/albireo/THELI/theli//bin/Linux_64//background_dynamic
P_BACKGROUNDSTATIC=${BIN}/background_static
+++ P_BACKGROUNDSTATIC=/home/albireo/THELI/theli//bin/Linux_64//background_static
P_MJD=${BIN}/mjd
+++ P_MJD=/home/albireo/THELI/theli//bin/Linux_64//mjd
P_LST=${BIN}/lst
+++ P_LST=/home/albireo/THELI/theli//bin/Linux_64//lst
P_IMALYZER=${BIN}/imalyzer
+++ P_IMALYZER=/home/albireo/THELI/theli//bin/Linux_64//imalyzer
P_E2ELL=${BIN}/e2ell
+++ P_E2ELL=/home/albireo/THELI/theli//bin/Linux_64//e2ell
P_FITSSMOOTHEDGE=${BIN}/fitssmoothedge
+++ P_FITSSMOOTHEDGE=/home/albireo/THELI/theli//bin/Linux_64//fitssmoothedge
P_FITSEXTRACTEXT=${BIN}/fitsextractext
+++ P_FITSEXTRACTEXT=/home/albireo/THELI/theli//bin/Linux_64//fitsextractext
P_ERRTEST=${BIN}/errtest
+++ P_ERRTEST=/home/albireo/THELI/theli//bin/Linux_64//errtest
P_BUILDINDEX=${BIN_ANET}/build-astrometry-index
+++ P_BUILDINDEX=/home/albireo/THELI/theli//gui/packages/astrometry/build/bin//build-astrometry-index
P_SOLVEFIELD=${BIN_ANET}/solve-field
+++ P_SOLVEFIELD=/home/albireo/THELI/theli//gui/packages/astrometry/build/bin//solve-field
P_XCORR=${BIN}/xcorr
+++ P_XCORR=/home/albireo/THELI/theli//bin/Linux_64//xcorr
#
# load the parameter files
#
. ~/.theli/param_set1.ini
+++ . /home/albireo/.theli/param_set1.ini
PROJECTNAME=Pferdekopf
++++ PROJECTNAME=Pferdekopf
NPARA=1
++++ NPARA=1
GUIVERSION=2.9.5
++++ GUIVERSION=2.9.5
KERNEL=Linux
++++ KERNEL=Linux
NFRAMES=47
++++ NFRAMES=47
V_PRE_SPLITMIRCUBE=N
++++ V_PRE_SPLITMIRCUBE=N
V_DO_BIAS=N
++++ V_DO_BIAS=N
V_DO_FLAT=Y
++++ V_DO_FLAT=Y
V_NONLINCORR=N
++++ V_NONLINCORR=N
V_AP_SERVER=vizier.u-strasbg.fr
++++ V_AP_SERVER=vizier.u-strasbg.fr
V_AP_MAGLIM=20
++++ V_AP_MAGLIM=20
V_AP_RADIUS=30
++++ V_AP_RADIUS=30
V_AP_REFRA=header
++++ V_AP_REFRA=header
V_AP_REFDEC=header
++++ V_AP_REFDEC=header
. ~/.theli/param_set2.ini
+++ . /home/albireo/.theli/param_set2.ini
V_PRE_RENAME_CHECKED=0
++++ V_PRE_RENAME_CHECKED=0
V_RENAME_FITSKEY=ARCFILE
++++ V_RENAME_FITSKEY=ARCFILE
V_SORT_FITSKEY=OBJECT
++++ V_SORT_FITSKEY=OBJECT
V_SORT_BIAS=
++++ V_SORT_BIAS=
V_SORT_DARK=
++++ V_SORT_DARK=
V_SORT_DOMEFLAT=
++++ V_SORT_DOMEFLAT=
V_SORT_SKYFLAT=
++++ V_SORT_SKYFLAT=
V_SORT_STD=
++++ V_SORT_STD=
V_PRE_XTALK_NOR_CHECKED=0
++++ V_PRE_XTALK_NOR_CHECKED=0
V_PRE_XTALK_ROW_CHECKED=0
++++ V_PRE_XTALK_ROW_CHECKED=0
V_PRE_XTALK_MULTI_CHECKED=0
++++ V_PRE_XTALK_MULTI_CHECKED=0
V_PRE_XTALK_NOR_AMPLITUDE=
++++ V_PRE_XTALK_NOR_AMPLITUDE=
V_PRE_XTALK_ROW_AMPLITUDE=
++++ V_PRE_XTALK_ROW_AMPLITUDE=
V_PRE_XTALK_NOR_BUTTONID=-1
++++ V_PRE_XTALK_NOR_BUTTONID=-1
V_PRE_XTALK_ROW_BUTTONID=-1
++++ V_PRE_XTALK_ROW_BUTTONID=-1
V_PRE_XTALK_MULTI_BUTTONID=-1
++++ V_PRE_XTALK_MULTI_BUTTONID=-1
V_PRE_XTALK_MULTI_NSECTION=
++++ V_PRE_XTALK_MULTI_NSECTION=
V_CAL_OVSCANNLOW=0
++++ V_CAL_OVSCANNLOW=0
V_CAL_OVSCANNHIGH=1
++++ V_CAL_OVSCANNHIGH=1
V_CAL_BIASNLOW=0
++++ V_CAL_BIASNLOW=0
V_CAL_BIASNHIGH=1
++++ V_CAL_BIASNHIGH=1
V_CAL_DARKNLOW=0
++++ V_CAL_DARKNLOW=0
V_CAL_DARKNHIGH=1
++++ V_CAL_DARKNHIGH=1
V_CAL_FLATNLOW=0
++++ V_CAL_FLATNLOW=0
V_CAL_FLATNHIGH=1
++++ V_CAL_FLATNHIGH=1
V_CAL_USEDARK=FALSE
++++ V_CAL_USEDARK=FALSE
V_BACK_NLOW=0
++++ V_BACK_NLOW=0
V_BACK_NHIGH=1
++++ V_BACK_NHIGH=1
V_BACK_DETECTTHRESH=1.3
++++ V_BACK_DETECTTHRESH=1.3
V_BACK_DETECTMINAREA=5
++++ V_BACK_DETECTMINAREA=5
V_BACK_MASKEXPAND=
++++ V_BACK_MASKEXPAND=
V_BACK_ILLUMSMOOTH=
++++ V_BACK_ILLUMSMOOTH=
V_BACK_FRINGESMOOTH=
++++ V_BACK_FRINGESMOOTH=
V_BACK_WINDOWSIZE=0
++++ V_BACK_WINDOWSIZE=0
V_BACK_GAPSIZE=1.0
++++ V_BACK_GAPSIZE=1.0
V_BACK_APPLYMODE=0
++++ V_BACK_APPLYMODE=0
V_BACK_COMBINEMETHOD=0
++++ V_BACK_COMBINEMETHOD=0
V_BACK_SEXFILTER=Y
++++ V_BACK_SEXFILTER=Y
V_BACK_ADJUSTGAINS=N
++++ V_BACK_ADJUSTGAINS=N
V_BACK_FRINGESCALE=Y
++++ V_BACK_FRINGESCALE=Y
V_BACK_SKY2PASS=Y
++++ V_BACK_SKY2PASS=Y
V_COLLDETECTTHRESH=
++++ V_COLLDETECTTHRESH=
V_COLLDETECTMINAREA=
++++ V_COLLDETECTMINAREA=
V_COLLMASKEXPAND=
++++ V_COLLMASKEXPAND=
V_COLLREJECTTHRESH=1.5
++++ V_COLLREJECTTHRESH=1.5
V_COLLDIRECTION=x
++++ V_COLLDIRECTION=x
V_COLLXMIN=
++++ V_COLLXMIN=
V_COLLXMAX=
++++ V_COLLXMAX=
V_COLLYMIN=
++++ V_COLLYMIN=
V_COLLYMAX=
++++ V_COLLYMAX=
V_COLLMASKACTION=1
++++ V_COLLMASKACTION=1
V_COLLAUTOTHRESHOLD=0
++++ V_COLLAUTOTHRESHOLD=0
V_WEIGHTBINMIN=-100
++++ V_WEIGHTBINMIN=-100
V_WEIGHTBINMAX=500
++++ V_WEIGHTBINMAX=500
V_WEIGHTBINSIZE=4
++++ V_WEIGHTBINSIZE=4
V_WEIGHTLOWTHRESHOLD=
++++ V_WEIGHTLOWTHRESHOLD=
V_WEIGHTHIGHTHRESHOLD=
++++ V_WEIGHTHIGHTHRESHOLD=
V_GLOBWFLATMIN=0.5
++++ V_GLOBWFLATMIN=0.5
V_GLOBWFLATMAX=1.6
++++ V_GLOBWFLATMAX=1.6
V_GLOBWDARKMIN=
++++ V_GLOBWDARKMIN=
V_GLOBWDARKMAX=
++++ V_GLOBWDARKMAX=
V_GLOBWDARKDIR=
++++ V_GLOBWDARKDIR=
V_COSMICSTHRESHOLD=0.1
++++ V_COSMICSTHRESHOLD=0.1
V_COSMICDT=6
++++ V_COSMICDT=6
V_COSMICDMIN=1
++++ V_COSMICDMIN=1
V_DEFECT_KERNELSIZE=
++++ V_DEFECT_KERNELSIZE=
V_DEFECT_ROWTOL=
++++ V_DEFECT_ROWTOL=
V_DEFECT_COLTOL=
++++ V_DEFECT_COLTOL=
V_DEFECT_CLUSTOL=
++++ V_DEFECT_CLUSTOL=
V_DEFECT_KERNELSIZE_SF=
++++ V_DEFECT_KERNELSIZE_SF=
V_DEFECT_ROWTOL_SF=
++++ V_DEFECT_ROWTOL_SF=
V_DEFECT_COLTOL_SF=
++++ V_DEFECT_COLTOL_SF=
V_DEFECT_CLUSTOL_SF=
++++ V_DEFECT_CLUSTOL_SF=
V_BLOOMLOWLIMIT=20000
++++ V_BLOOMLOWLIMIT=20000
V_BLOOMMINAREA=100
++++ V_BLOOMMINAREA=100
V_BLOOMWIDTH=0
++++ V_BLOOMWIDTH=0
V_WEIGHT_BINOUTLIER=FALSE
++++ V_WEIGHT_BINOUTLIER=FALSE
V_GLOBW_UNIFORMWEIGHT=FALSE
++++ V_GLOBW_UNIFORMWEIGHT=FALSE
V_MASKBLOOMSPIKE=0
++++ V_MASKBLOOMSPIKE=0
V_AP_DETECTTHRESH=5.0
++++ V_AP_DETECTTHRESH=5.0
V_AP_DETECTMINAREA=5
++++ V_AP_DETECTMINAREA=5
V_DEBLENDMINCONT=0.0005
++++ V_DEBLENDMINCONT=0.0005
V_AP_LOWNUM=1
++++ V_AP_LOWNUM=1
V_SEXCATMINFWHM=1.5
++++ V_SEXCATMINFWHM=1.5
V_SEXCATFLAG=0
++++ V_SEXCATFLAG=0
V_SATURATION=
++++ V_SATURATION=
V_SEXBACKLEVEL=
++++ V_SEXBACKLEVEL=
V_AP_FILTER=N
++++ V_AP_FILTER=N
V_SCAMP_MAXPOSANGLE=2.0
++++ V_SCAMP_MAXPOSANGLE=2.0
V_SCAMP_MAXOFFSET=2.0
++++ V_SCAMP_MAXOFFSET=2.0
V_SCAMP_MAXSCALE=1.05
++++ V_SCAMP_MAXSCALE=1.05
V_SCAMP_SNLOW=5
++++ V_SCAMP_SNLOW=5
V_SCAMP_SNHIGH=20
++++ V_SCAMP_SNHIGH=20
V_SCAMP_FGROUPRADIUS=1.0
++++ V_SCAMP_FGROUPRADIUS=1.0
V_SCAMP_CROSSIDRADIUS=0
++++ V_SCAMP_CROSSIDRADIUS=0
V_SCAMP_ASTREFWEIGHT=1.0
++++ V_SCAMP_ASTREFWEIGHT=1.0
V_SCAMP_ASTRINSTRUKEY=FILTER
++++ V_SCAMP_ASTRINSTRUKEY=FILTER
V_SCAMP_PHOTINSTRUKEY=FILTER
++++ V_SCAMP_PHOTINSTRUKEY=FILTER
V_SCAMP_POLYORDER=3
++++ V_SCAMP_POLYORDER=3
V_SCAMP_POLYORDER2=
++++ V_SCAMP_POLYORDER2=
V_SCAMP_DISTORTGROUPS=
++++ V_SCAMP_DISTORTGROUPS=
V_SCAMP_DISTORTKEYS=
++++ V_SCAMP_DISTORTKEYS=
V_SCAMP_STABILITY=INSTRUMENT
++++ V_SCAMP_STABILITY=INSTRUMENT
V_SCAMP_MOSAICTYPE=UNCHANGED
++++ V_SCAMP_MOSAICTYPE=UNCHANGED
V_SCAMP_FOCALPLANE=DEFAULT
++++ V_SCAMP_FOCALPLANE=DEFAULT
V_SCAMP_MATCHFLIPPED=N
++++ V_SCAMP_MATCHFLIPPED=N
V_SCAMP_MATCHWCS=Y
++++ V_SCAMP_MATCHWCS=Y
V_ANET_MAXSCALE=1.05
++++ V_ANET_MAXSCALE=1.05
V_ANET_POLYORDER=3
++++ V_ANET_POLYORDER=3
V_ANET_SCAMPDISTORT=N
++++ V_ANET_SCAMPDISTORT=N
V_ABSPHOT_FILTER=B
++++ V_ABSPHOT_FILTER=B
V_ABSPHOT_COLORFIXED=0.1
++++ V_ABSPHOT_COLORFIXED=0.1
V_ABSPHOT_EXTINCTION=0
++++ V_ABSPHOT_EXTINCTION=0
V_ABSPHOT_ZPMIN=24
++++ V_ABSPHOT_ZPMIN=24
V_ABSPHOT_ZPMAX=25
++++ V_ABSPHOT_ZPMAX=25
V_ABSPHOT_STDMINMAG=0.0
++++ V_ABSPHOT_STDMINMAG=0.0
V_ABSPHOT_MAXPHOTERR=0.05
++++ V_ABSPHOT_MAXPHOTERR=0.05
V_ABSPHOT_WCSERR=10
++++ V_ABSPHOT_WCSERR=10
V_ABSPHOT_WCSERRCHECKBOX=Y
++++ V_ABSPHOT_WCSERRCHECKBOX=Y
V_ABSPHOT_STDCAT_DIRECT=SDSS
++++ V_ABSPHOT_STDCAT_DIRECT=SDSS
V_ABSPHOT_STDFILTERM2=u
++++ V_ABSPHOT_STDFILTERM2=u
V_ABSPHOT_STDCAT_INDIRECT=LANDOLT_UBVRI
++++ V_ABSPHOT_STDCAT_INDIRECT=LANDOLT_UBVRI
V_ABSPHOT_STDFILTER=U
++++ V_ABSPHOT_STDFILTER=U
V_ABSPHOT_STDCOLOR=UmB
++++ V_ABSPHOT_STDCOLOR=UmB
V_ABSPHOT_CALMODE=RUNCALIB
++++ V_ABSPHOT_CALMODE=RUNCALIB
V_ABSPHOT_FITTINGMETHODM2=CHIP
++++ V_ABSPHOT_FITTINGMETHODM2=CHIP
V_COADD_REFRA=
++++ V_COADD_REFRA=
V_COADD_REFDEC=
++++ V_COADD_REFDEC=
V_COADD_IDENT=(null)
++++ V_COADD_IDENT=(null)
V_COADD_SEEING=
++++ V_COADD_SEEING=
V_COADD_RZP=
++++ V_COADD_RZP=
V_COADD_PIXSCALE=0.89
++++ V_COADD_PIXSCALE=0.89
V_COADD_SIZEX=
++++ V_COADD_SIZEX=
V_COADD_SIZEY=
++++ V_COADD_SIZEY=
V_COADD_SKYPOSANGLE=
++++ V_COADD_SKYPOSANGLE=
V_COADD_CHIPS=""
++++ V_COADD_CHIPS=
V_COADD_FILTERTHRESHOLD=
++++ V_COADD_FILTERTHRESHOLD=
V_COADD_FILTERCLUSTERSIZE=
++++ V_COADD_FILTERCLUSTERSIZE=
V_COADD_FILTERBORDERWIDTH=
++++ V_COADD_FILTERBORDERWIDTH=
V_COADD_SMOOTHEDGE=
++++ V_COADD_SMOOTHEDGE=
V_COADD_PROPMOTIONRA=
++++ V_COADD_PROPMOTIONRA=
V_COADD_PROPMOTIONDEC=
++++ V_COADD_PROPMOTIONDEC=
V_COADD_KERNEL=LANCZOS3
++++ V_COADD_KERNEL=LANCZOS3
V_COADD_FILTER=
++++ V_COADD_FILTER=
V_COADD_PROJECTION=TAN
++++ V_COADD_PROJECTION=TAN
V_COADD_CELESTIALTYPE=EQUATORIAL
++++ V_COADD_CELESTIALTYPE=EQUATORIAL
V_COADD_COMBINETYPE=WEIGHTED
++++ V_COADD_COMBINETYPE=WEIGHTED
. ~/.theli/param_set3.ini
+++ . /home/albireo/.theli/param_set3.ini

# Geographical latitude of the observatory
OBSLAT=
++ OBSLAT=

# Pixel scale in x and y [degrees] (CDELT1/2 keywords)
PIXSCX=-0
++ PIXSCX=-0
PIXSCY=0
++ PIXSCY=0

# Pixel scale in arcsec
PIXSCALE=
++ PIXSCALE=

# Detector gain
GAIN=1.0
++ GAIN=1.0

# Overscan regions. The values are the x-range.
# The min is given by OVSCANX1, the max by OVSCANX2.
# We need separate regions for each chip.

OVSCANX1=([1]=0)
++ OVSCANX1=([1]=0)
OVSCANX2=([1]=0)
++ OVSCANX2=([1]=0)

# Sections for the cutting. Select those pixels that receive light.
# Give min values for x and y, and the extent in x and y.

CUTX=([1]=1)
++ CUTX=([1]=1)
CUTY=([1]=1)
++ CUTY=([1]=1)
SIZEX=([1]=3358)
++ SIZEX=([1]=3358)
SIZEY=([1]=2536)
++ SIZEY=([1]=2536)

# Reference pixels for each chip.

REFPIXX=([1]=100)
++ REFPIXX=([1]=100)
REFPIXY=([1]=100)
++ REFPIXY=([1]=100)

# Camera type
TYPE=OPT
++ TYPE=OPT


. bash.include
+ . bash.include
function get_wcs {

  local k

  k=1
  cd11=""
  cd12=""
  cd21=""
  cd22=""
  cpx1=""
  cpx2=""

  while [ "${k}" -le "${NCHIPS}" ]
  do
    if [ "${NCHIPS}" = "1" ]; then
       ext=0
    else
       ext=${k}
    fi

    # test if the CD matrix is present
    testcd=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CD1_1 | ${P_GAWK} '(NR==2) {print $2}'`
    testcdelt=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CDELT1 | ${P_GAWK} '(NR==2) {print $2}'`
    testcdelt2=`echo ${testcdelt} | ${P_GAWK} '{if ($1>=1) print "bad"; else print "good"}'`
    if [ "${testcd}"_A != "_A" ] && [ "${testcd}" != "KEY_N/A" ]; then
        cdmatrix=`${P_DFITS} -x ${ext} ${FILE} | \
	          ${P_FITSORT} CD1_1 CD1_2 CD2_1 CD2_2 | \
                  ${P_GAWK} '($1!="FILE") {print $2, $3, $4, $5}'`
    else
	if [ "${testcdelt}"_A != "_A" ] && [ "${testcdelt}" != "KEY_N/A" ] && [ "${testcdelt2}" = "good" ] ; then
           cdmatrix=`${P_DFITS} -x ${ext} ${FILE} | \
                  ${P_FITSORT} CDELT1 CDELT2 | \
		  ${P_GAWK} '($1!="FILE") {print $2, "0.0", "0.0", $3}'`
    	else
           cdmatrix="${PIXSCX} 0.0 0.0 ${PIXSCY}"
        fi
    fi

    # test if the reference pixel is present
    testcrpix=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CRPIX1 | ${P_GAWK} '(NR==2) {print $2}'`
    if [ "${testcrpix}"_A != "_A" ] && [ "${testcrpix}" != "KEY_N/A" ]; then
        refpixel=`${P_DFITS} -x ${ext} ${FILE} | \
	          ${P_FITSORT} CRPIX1 CRPIX2 | \
                  ${P_GAWK} '($1!="FILE") {print $2, $3}'`
    else
	rpix1=${REFPIXX[${k}]}
	rpix2=${REFPIXY[${k}]}
	if [ "${rpix1}_A" = "_A" ]; then
	   rpix1=1
	fi	   
	if [ "${rpix2}_A" = "_A" ]; then
	   rpix2=1
	fi   
        refpixel="${rpix1} ${rpix2}"
    fi

    c11=`echo ${cdmatrix} | ${P_GAWK} '{print $1}'`
    c12=`echo ${cdmatrix} | ${P_GAWK} '{print $2}'`
    c21=`echo ${cdmatrix} | ${P_GAWK} '{print $3}'`
    c22=`echo ${cdmatrix} | ${P_GAWK} '{print $4}'`
    cr1=`echo ${refpixel} | ${P_GAWK} '{print $1}'`
    cr2=`echo ${refpixel} | ${P_GAWK} '{print $2}'`
    if [ "${k}" = "1" ]; then
       cd11="${c11}"
       cd12="${c12}"
       cd21="${c21}"
       cd22="${c22}"
       cpx1="${cr1}"
       cpx2="${cr2}"
    else
       cd11="${cd11},${c11}"
       cd12="${cd12},${c12}"
       cd21="${cd21},${c21}"
       cd22="${cd22},${c22}"
       cpx1="${cpx1},${cr1}"
       cpx2="${cpx2},${cr2}"
    fi

    k=$(( $k + 1 ))
  done
}

function get_wcsext {

  local k

  k=1
  cd11=""
  cd12=""
  cd21=""
  cd22=""
  cpx1=""
  cpx2=""

  while [ "${k}" -le "${NCHIPS}" ]
  do
    ext=1

    # test if the CD matrix is present
    testcd=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CD1_1 | ${P_GAWK} '(NR==2) {print $2}'`
    testcdelt=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CDELT1 | ${P_GAWK} '(NR==2) {print $2}'`
    testcdelt2=`echo ${testcdelt} | ${P_GAWK} '{if ($1>=1) print "bad"; else print "good"}'`
    if [ "${testcd}"_A != "_A" ] && [ "${testcd}" != "KEY_N/A" ]; then
        cdmatrix=`${P_DFITS} -x ${ext} ${FILE} | \
	          ${P_FITSORT} CD1_1 CD1_2 CD2_1 CD2_2 | \
                  ${P_GAWK} '($1!="FILE") {print $2, $3, $4, $5}'`
    else
	if [ "${testcdelt}"_A != "_A" ] && [ "${testcdelt}" != "KEY_N/A" ] && [ "${testcdelt2}" = "good" ] ; then
           cdmatrix=`${P_DFITS} -x ${ext} ${FILE} | \
                  ${P_FITSORT} CDELT1 CDELT2 | \
		  ${P_GAWK} '($1!="FILE") {print $2, "0.0", "0.0", $3}'`
    	else
           cdmatrix="${PIXSCX} 0.0 0.0 ${PIXSCY}"
        fi
    fi

    # test if the reference pixel is present
    testcrpix=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CRPIX1 | ${P_GAWK} '(NR==2) {print $2}'`
    if [ "${testcrpix}"_A != "_A" ] && [ "${testcrpix}" != "KEY_N/A" ]; then
        refpixel=`${P_DFITS} -x ${ext} ${FILE} | \
	          ${P_FITSORT} CRPIX1 CRPIX2 | \
                  ${P_GAWK} '($1!="FILE") {print $2, $3}'`
    else
	rpix1=${REFPIXX[${k}]}
	rpix2=${REFPIXY[${k}]}
	if [ "${rpix1}_A" = "_A" ]; then
	   rpix1=1
	fi	   
	if [ "${rpix2}_A" = "_A" ]; then
	   rpix2=1
	fi   
        refpixel="${rpix1} ${rpix2}"
    fi

    c11=`echo ${cdmatrix} | ${P_GAWK} '{print $1}'`
    c12=`echo ${cdmatrix} | ${P_GAWK} '{print $2}'`
    c21=`echo ${cdmatrix} | ${P_GAWK} '{print $3}'`
    c22=`echo ${cdmatrix} | ${P_GAWK} '{print $4}'`
    cr1=`echo ${refpixel} | ${P_GAWK} '{print $1}'`
    cr2=`echo ${refpixel} | ${P_GAWK} '{print $2}'`
    if [ "${k}" = "1" ]; then
       cd11="${c11}"
       cd12="${c12}"
       cd21="${c21}"
       cd22="${c22}"
       cpx1="${cr1}"
       cpx2="${cr2}"
    else
       cd11="${cd11},${c11}"
       cd12="${cd12},${c12}"
       cd21="${cd21},${c21}"
       cd22="${cd22},${c22}"
       cpx1="${cpx1},${cr1}"
       cpx2="${cpx2},${cr2}"
    fi

    k=$(( $k + 1 ))
  done
}



function get_statminsection {
	 
  local xmin
  local ymin
  local xmax
  local ymax

  if  [ "${STATXMIN[${CHIP}]}"_A != "_A" ] && \
      [ "${STATXMAX[${CHIP}]}"_A != "_A" ] && \
      [ "${STATYMIN[${CHIP}]}"_A != "_A" ] && \
      [ "${STATYMAX[${CHIP}]}"_A != "_A" ]; then
      xmin=${STATXMIN[${CHIP}]}
      xmax=${STATXMAX[${CHIP}]}
      ymin=${STATYMIN[${CHIP}]}
      ymax=${STATYMAX[${CHIP}]}
  else
    k=1
    statminsection=""
    xmax=${SIZEX[1]}
    ymax=${SIZEY[1]}

    while [ "${k}" -le "${NCHIPS}" ]
    do
	if [ ${SIZEX[k]} -lt ${xmax} ]; then
       	    xmax=${SIZEX[k]}
    	fi
    	if [ ${SIZEY[k]} -lt ${ymax} ]; then
       	    ymax=${SIZEY[k]}
        fi
        k=$((${k}+1))
    done
    
    xmin=2
    ymin=2
    xmax=$((${xmax}-1))
    ymax=$((${ymax}-1))
  fi

  statminsection="${xmin},${xmax},${ymin},${ymax}"
}


function p_ls {
  ls -l | grep ^- | ${P_GAWK} '{print $NF}'
}

# the following extracts keywords;
# leading and trailing whitespace is removed (2nd call to gawk)
# and blanks inside the keyword value are replaced with underscores (e.g. for OBJECT keyword)
function get_key {
  ${P_DFITS} $1 | ${P_FITSORT} -d "$2" | ${P_GAWK} 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}' | ${P_GAWK} '{$1=$1}1' | sed 's/ /_/g'
}

function get_keyext {
  ${P_DFITS} -x 1 $1 | ${P_FITSORT} -d "$2" | ${P_GAWK} '{if ($2!="KEY_N/A") print $2}'
}

function get_region {
  # merge global and local region files if they exist
  regionfile=""
  region=""

  test -f ${TEMPDIR}/regionfile_${CHIP}.reg && rm ${TEMPDIR}/regionfile_${CHIP}.reg 

  if [ -f ${INSTDIR}/${INSTRUMENT}.reg ]; then
  	cat ${INSTDIR}/${INSTRUMENT}.reg >> \
  	    ${TEMPDIR}/regionfile_${CHIP}.reg
  	regionfile="${TEMPDIR}/regionfile_${CHIP}.reg"
	region="-d ${regionfile}"
  fi
  if [ -f ${INSTDIR}/${INSTRUMENT}_${CHIP}.reg ]; then
  	cat ${INSTDIR}/${INSTRUMENT}_${CHIP}.reg >> \
  	    ${TEMPDIR}/regionfile_${CHIP}.reg
  	regionfile="${TEMPDIR}/regionfile_${CHIP}.reg"
	region="-d ${regionfile}"
  fi
}

function get_region_chip {
  # merge global and local region files if they exist
  # for a different chip than the currently processed one 
  # (constant sky subtraction)
  regionfile=""
  region=""

  test -f ${TEMPDIR}/regionfile_$1.reg_$$ && rm ${TEMPDIR}/regionfile_$1.reg_$$

  if [ -f ${INSTDIR}/${INSTRUMENT}.reg ]; then
  	cat ${INSTDIR}/${INSTRUMENT}.reg >> \
  	    ${TEMPDIR}/regionfile_$1.reg_$$
  	regionfile="${TEMPDIR}/regionfile_$1.reg_$$"
	region="-d ${regionfile}"
  fi
  if [ -f ${INSTDIR}/${INSTRUMENT}_$1.reg ]; then
  	cat ${INSTDIR}/${INSTRUMENT}_$1.reg >> \
  	    ${TEMPDIR}/regionfile_$1.reg_$$
  	regionfile="${TEMPDIR}/regionfile_$1.reg_$$"
	region="-d ${regionfile}"
  fi
}

function prepare_sex_for_region {
  backstring=""
  weightstring=""
  if [ -f ${regionfile} ] && [ "${regionfile}_A" != "_A" ]; then
      # estimate the background, ignoring blanked pixels
      background=`${P_FITSSTAT} -i ${FILE} -m median -q`
      backstring="-BACK_TYPE MANUAL -BACK_VALUE ${background}"
      weightstring="-WEIGHT_TYPE MAP_WEIGHT -WEIGHT_IMAGE /$1/WEIGHTS/globalweight_dummy_${CHIP}.fits"

      # check if the dummy weight exists
      if [ ! -e /$1/WEIGHTS/globalweight_dummy_${CHIP}.fits ]; then
	  mkdir -p /$1/WEIGHTS/
	  ${P_IC} -p -32 -c ${SIZEX[${CHIP}]} ${SIZEY[${CHIP}]} '1' > ${TEMPDIR}/dummy_${CHIP}.fits
	  ${P_FITSPOLYGON} -i ${TEMPDIR}/dummy_${CHIP}.fits -p ${regionfile} \
	      -o /$1/WEIGHTS/globalweight_dummy_${CHIP}.fits
	  rm ${TEMPDIR}/dummy_${CHIP}.fits
      fi
  fi
}


function prepare_imred_for_backgroundmodel {
  # The relevant settings depending on the apply mode of the background model
  flatstring=""
  fringestring=""

  ####################################################
  # subtract background model
  ####################################################
  if [ "${V_BACK_APPLYMODE}" -eq 0 ]; then
      fringestring="-FLAT N -FRINGE Y -FRINGE_SCALE ${V_BACK_FRINGESCALE}"
      if [ "${V_BACK_ILLUMSMOOTH}"_A != "_A" ]; then
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}_illum.fits
      else
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}.fits
      fi
      fringestring="${fringestring} -FRINGE_IMAGE ${FRINGEIMAGE} -FRINGE_REFIMAGE ${FRINGEIMAGE}"
  fi

  ####################################################
  # divide background model
  ####################################################
  if [ "${V_BACK_APPLYMODE}" -eq 1 ]; then
      flatstring="-FRINGE N -FLAT Y -FLAT_THRESHHOLD 0.1 -FLAT_SCALE ${V_BACK_ADJUSTGAINS}"
      if [ "${V_BACK_ILLUMSMOOTH}"_A != "_A" ]; then
	  FLATIMAGE=/$1/$2/$2_${CHIP}_illum.fits
      else
	  FLATIMAGE=/$1/$2/$2_${CHIP}.fits
      fi
      flatstring="${flatstring} -FLAT_IMAGE ${FLATIMAGE} -FLAT_SCALEIMAGE ${FLATIMAGE}"
  fi

  ####################################################
  # subtract fringing model
  ####################################################
  if [ "${V_BACK_APPLYMODE}" -eq 2 ]; then
      fringestring="-FRINGE Y -FRINGE_SCALE ${V_BACK_FRINGESCALE}"
      if [ "${V_BACK_FRINGESMOOTH}"_A != "_A" ]; then
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}_fringe_smooth.fits
      else
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}_fringe.fits
      fi
      fringestring="${fringestring} -FRINGE_IMAGE ${FRINGEIMAGE} -FRINGE_REFIMAGE /$1/$2/$2_${CHIP}_illum.fits"
  fi

  ####################################################
  # divide background model, subtract fringing model
  ####################################################
  if [ "${V_BACK_APPLYMODE}" -eq 3 ]; then
      flatstring="-FLAT Y -FLAT_THRESHHOLD 0.1 -FLAT_SCALE ${V_BACK_ADJUSTGAINS}"
      if [ "${V_BACK_ILLUMSMOOTH}"_A != "_A" ]; then
	  FLATIMAGE=/$1/$2/$2_${CHIP}_illum.fits
      else
	  FLATIMAGE=/$1/$2/$2_${CHIP}.fits
      fi
      flatstring="${flatstring} -FLAT_IMAGE ${FLATIMAGE} -FLAT_SCALEIMAGE ${FLATIMAGE}"

      fringestring="-FRINGE Y -FRINGE_SCALE ${V_BACK_FRINGESCALE}"
      if [ "${V_BACK_FRINGESMOOTH}"_A != "_A" ]; then
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}_fringe_smooth.fits
      else
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}_fringe.fits
      fi
      fringestring="${fringestring} -FRINGE_IMAGE ${FRINGEIMAGE} -FRINGE_REFIMAGE /$1/$2/$2_${CHIP}_illum.fits"
  fi

}

#
# the resultdir is where the output coadded images
# will go. If ONE image of the corresponding chip
# is a link the image will go to THIS directory
for CHIP in $4
do
  RESULTDIR[${CHIP}]="$1/$3"
done
+ for CHIP in '$4'
+ RESULTDIR[${CHIP}]=/home/albireo/14-17.02.2015/rgb//flat

# Correction overscan; create config file on the fly
# we do not assume that the overscan is the same for all chips

for CHIP in $4
do

# check whether the master calibration file
# exists already. if yes, then delete it.

  test -f $1/$3/$3_${CHIP}.fits && rm $1/$3/$3_${CHIP}.fits

  FILES=`ls $1/$3/*_${CHIP}.fits`

  for FILE in ${FILES}
  do
      BAYERPATTERN=`get_key ${FILE} BAYERPAT`
      if [ -L ${FILE} ]; then
	  LINK=`${P_READLINK} ${FILE}`
	  BASE=`basename ${LINK} .fits`
	  DIR=`dirname ${LINK}`
	  ln -s ${DIR}/${BASE}OC.fits $1/$2/${BASE}OC.fits
	  RESULTDIR[${CHIP}]=`dirname ${LINK}`
      fi
  done

  MAXX=$(( ${CUTX[${CHIP}]} + ${SIZEX[${CHIP}]} - 1 ))
  MAXY=$(( ${CUTY[${CHIP}]} + ${SIZEY[${CHIP}]} - 1 ))

  do_overscan=Y
  if [ "${OVSCANX1[${CHIP}]}" = "0" ] && \
      [ "${OVSCANX2[${CHIP}]}" = "0" ]; then
      do_overscan=N
  fi

  # check the number of exposures
  numexp=`ls $1/$3/*_${CHIP}.fits | wc | ${P_GAWK} '{print $1}'`

  # if less than 3 exposures are available:
  if [ "${numexp}" -lt 3 ]; then
      echo PREPOROCESS_FAILURE: Need at least three images of chip ${CHIP} to create master flat
      continue
  fi

  get_statminsection

  # if numexp <= NFRAMES combine the images right away,
  # otherwise write them down and then combine them.

  if [ "${numexp}" -gt "${NFRAMES}" ] || [ "${V_NONLINCORR}" = "Y" ]; then
      # overscan correct, trim and bias correct FLAT frames
      ${P_IMRED_ECL:?} `ls /$1/$3/*_${CHIP}.fits` \
	  -c ${CONF}/imred.conf \
	  -MAXIMAGES ${NFRAMES} \
	  -OVERSCAN ${do_overscan} \
	  -OVERSCAN_REGION ${OVSCANX1[${CHIP}]},${OVSCANX2[${CHIP}]} \
	  -OVERSCAN_REJECT ${V_CAL_OVSCANNLOW},${V_CAL_OVSCANNHIGH} \
	  -BIAS ${V_DO_BIAS} \
	  -BIAS_IMAGE /$1/$2/$2_${CHIP}.fits \
	  -OUTPUT Y \
	  -OUTPUT_DIR /$1/$3/ \
	  -TRIM Y \
	  -OUTPUT_SUFFIX OC.fits \
	  -TRIM_REGION ${CUTX[${CHIP}]},${MAXX},${CUTY[${CHIP}]},${MAXY} \
	  -STATSSEC ${statminsection}
      
      # correct for nonlinearity
      if [ "${V_NONLINCORR}" = "Y" ] && [ -f ${INSTDIR}/${INSTRUMENT}".nldat" ]; then
	  ls /$1/$3/*_${CHIP}OC.fits > ${TEMPDIR}/nonlinlist_$$
	  cat ${TEMPDIR}/nonlinlist_$$ |\
          {
	    while read file
	    do
		BASE=`basename ${file} _${CHIP}OC.fits`
		${P_FITSNONLINEARITY} -i ${file} -o ${RESULTDIR[${CHIP}]}/${BASE}_${CHIP}OCnl.fits \
		    -c ${CHIP} -f ${INSTDIR}/${INSTRUMENT}".nldat"
		mv ${RESULTDIR[${CHIP}]}/${BASE}_${CHIP}OCnl.fits \
		    ${RESULTDIR[${CHIP}]}/${BASE}_${CHIP}OC.fits 
	    done
	  }
      fi
      
      # and combine them
      ${P_IMSTATS} -d 6 `ls /$1/$3/*_${CHIP}OC.fits` \
	  -o ${TEMPDIR}/flat_images_$$ -t -1e8 1e8 
      ${P_IMCOMBFLAT_IMCAT} -i ${TEMPDIR}/flat_images_$$\
	  -o ${RESULTDIR[${CHIP}]}/$3_${CHIP}.fits \
	  -s 1 -e ${V_CAL_FLATNLOW} ${V_CAL_FLATNHIGH} 
  fi
  
  if [ "${numexp}" -le "${NFRAMES}" ] && [ "${V_NONLINCORR}" = "N" ]; then
  # overscan correct, trim and bias correct FLAT frames
      ${P_IMRED_ECL:?} `ls /$1/$3/*_${CHIP}.fits` \
	  -c ${CONF}/imred.conf \
	  -MAXIMAGES ${NFRAMES} \
	  -OVERSCAN ${do_overscan} \
	  -OVERSCAN_REGION ${OVSCANX1[${CHIP}]},${OVSCANX2[${CHIP}]} \
	  -OVERSCAN_REJECT ${V_CAL_OVSCANNLOW},${V_CAL_OVSCANNHIGH} \
	  -BIAS ${V_DO_BIAS} \
	  -BIAS_IMAGE /$1/$2/$2_${CHIP}.fits \
	  -OUTPUT N \
	  -OUTPUT_DIR ${RESULTDIR[${CHIP}]}/ \
	  -TRIM Y \
	  -OUTPUT_SUFFIX OC.fits \
	  -TRIM_REGION ${CUTX[${CHIP}]},${MAXX},${CUTY[${CHIP}]},${MAXY} \
	  -COMBINE Y \
	  -COMBINE_RESCALE Y \
	  -COMBINE_OUTPUT ${RESULTDIR[${CHIP}]}/$3_${CHIP}.fits \
	  -COMBINE_REJECT ${V_CAL_FLATNLOW},${V_CAL_FLATNHIGH} \
	  -STATSSEC ${statminsection}
  fi
      
  # merge global and individual region files, if they exist
  get_region

  # mask the flat
  if [ "${region}"_A != "_A" ]; then
      # we mask it with a very small negative value, so that the
      # corresponding pixels in the flat-fielded data will be VERY
      # negative, and thus outside the range where statistics is probed
      ${P_FITSPOLYGON} \
	  -i ${RESULTDIR[${CHIP}]}/$3_${CHIP}.fits \
	  -o ${RESULTDIR[${CHIP}]}/$3_${CHIP}.masked.fits \
	  -p ${regionfile} \
	  -v -1e-9
     mv ${RESULTDIR[${CHIP}]}/$3_${CHIP}.masked.fits ${RESULTDIR[${CHIP}]}/$3_${CHIP}.fits
  fi
  
  if [ ! "${BAYERPATTERN}_A" = "_A" ]; then
      FILE=$1/$3/$3_${CHIP}.fits
      BASE=`basename ${FILE} _${CHIP}.fits`
      ${P_EQUALISEBAYERFLAT} -i ${FILE} -o ${BASE}_tmp.fits
      mv ${BASE}_tmp.fits ${FILE}
  fi
  
  if [ "${RESULTDIR[${CHIP}]}" != "$1/$3" ]; then
      ln -s ${RESULTDIR[${CHIP}]}/$3_${CHIP}.fits $1/$3/$3_${CHIP}.fits
  fi  
  
  \rm -f /$1/$3/*_${CHIP}OC.fits
  if [ "${RESULTDIR[${CHIP}]}" != "$1/$3" ]; then
      \rm -f ${RESULTDIR[${CHIP}]}/*_${CHIP}OC.fits
  fi  
  
done
+ for CHIP in '$4'
+ test -f /home/albireo/14-17.02.2015/rgb//flat/flat_1.fits
ls $1/$3/*_${CHIP}.fits
++ ls /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-28-23_Red_0000_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-28-45_Red_0001_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-06_Red_0002_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-28_Red_0003_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-49_Red_0004_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-10_Red_0005_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-32_Red_0006_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-53_Red_0007_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-09_Green_0008_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-29_Green_0009_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-48_Green_0010_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-07_Green_0011_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-27_Green_0012_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-46_Green_0013_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-06_Green_0014_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-26_Green_0015_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-55_Blue_0016_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-35-20_Blue_0017_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-36-34_Blue_0018_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-36-55_Blue_0019_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-15_Blue_0020_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-35_Blue_0021_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-55_Blue_0022_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-38-15_Blue_0023_1.fits
+ FILES='/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-28-23_Red_0000_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-28-45_Red_0001_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-06_Red_0002_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-28_Red_0003_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-49_Red_0004_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-10_Red_0005_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-32_Red_0006_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-53_Red_0007_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-09_Green_0008_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-29_Green_0009_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-48_Green_0010_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-07_Green_0011_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-27_Green_0012_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-46_Green_0013_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-06_Green_0014_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-26_Green_0015_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-55_Blue_0016_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-35-20_Blue_0017_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-36-34_Blue_0018_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-36-55_Blue_0019_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-15_Blue_0020_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-35_Blue_0021_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-55_Blue_0022_1.fits
/home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-38-15_Blue_0023_1.fits'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-28-23_Red_0000_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-28-23_Red_0000_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk '{$1=$1}1'
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ sed 's/ /_/g'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-28-23_Red_0000_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-28-45_Red_0001_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-28-45_Red_0001_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ sed 's/ /_/g'
++ /usr/bin/gawk '{$1=$1}1'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-28-45_Red_0001_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-06_Red_0002_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-06_Red_0002_1.fits
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ /usr/bin/gawk '{$1=$1}1'
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ sed 's/ /_/g'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-06_Red_0002_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-28_Red_0003_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-28_Red_0003_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk '{$1=$1}1'
++ sed 's/ /_/g'
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-28_Red_0003_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-49_Red_0004_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-49_Red_0004_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk '{$1=$1}1'
++ sed 's/ /_/g'
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-49_Red_0004_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-10_Red_0005_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-10_Red_0005_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk '{$1=$1}1'
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ sed 's/ /_/g'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-10_Red_0005_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-32_Red_0006_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-32_Red_0006_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ sed 's/ /_/g'
++ /usr/bin/gawk '{$1=$1}1'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-32_Red_0006_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-53_Red_0007_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-53_Red_0007_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ sed 's/ /_/g'
++ /usr/bin/gawk '{$1=$1}1'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-53_Red_0007_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-09_Green_0008_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-09_Green_0008_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk '{$1=$1}1'
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ sed 's/ /_/g'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-09_Green_0008_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-29_Green_0009_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-29_Green_0009_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk '{$1=$1}1'
++ sed 's/ /_/g'
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-29_Green_0009_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-48_Green_0010_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-48_Green_0010_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ sed 's/ /_/g'
++ /usr/bin/gawk '{$1=$1}1'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-48_Green_0010_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-07_Green_0011_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-07_Green_0011_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ /usr/bin/gawk '{$1=$1}1'
++ sed 's/ /_/g'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-07_Green_0011_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-27_Green_0012_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-27_Green_0012_1.fits
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ /usr/bin/gawk '{$1=$1}1'
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ sed 's/ /_/g'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-27_Green_0012_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-46_Green_0013_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-46_Green_0013_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk '{$1=$1}1'
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ sed 's/ /_/g'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-46_Green_0013_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-06_Green_0014_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-06_Green_0014_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ sed 's/ /_/g'
++ /usr/bin/gawk '{$1=$1}1'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-06_Green_0014_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-26_Green_0015_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-26_Green_0015_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk '{$1=$1}1'
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ sed 's/ /_/g'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-26_Green_0015_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-55_Blue_0016_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-55_Blue_0016_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ sed 's/ /_/g'
++ /usr/bin/gawk '{$1=$1}1'
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-55_Blue_0016_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-35-20_Blue_0017_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-35-20_Blue_0017_1.fits
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ /usr/bin/gawk '{$1=$1}1'
++ sed 's/ /_/g'
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-35-20_Blue_0017_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-36-34_Blue_0018_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-36-34_Blue_0018_1.fits
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ /usr/bin/gawk '{$1=$1}1'
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ sed 's/ /_/g'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-36-34_Blue_0018_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-36-55_Blue_0019_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-36-55_Blue_0019_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ /usr/bin/gawk '{$1=$1}1'
++ sed 's/ /_/g'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-36-55_Blue_0019_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-15_Blue_0020_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-15_Blue_0020_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ /usr/bin/gawk '{$1=$1}1'
++ sed 's/ /_/g'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-15_Blue_0020_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-35_Blue_0021_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-35_Blue_0021_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk '{$1=$1}1'
++ sed 's/ /_/g'
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-35_Blue_0021_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-55_Blue_0022_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-55_Blue_0022_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ /usr/bin/gawk '{$1=$1}1'
++ sed 's/ /_/g'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-55_Blue_0022_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-38-15_Blue_0023_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-38-15_Blue_0023_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ /usr/bin/gawk '{$1=$1}1'
++ sed 's/ /_/g'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-38-15_Blue_0023_1.fits ']'
+ MAXX=3358
+ MAXY=2536
+ do_overscan=Y
+ '[' 0 = 0 ']'
+ '[' 0 = 0 ']'
+ do_overscan=N
ls $1/$3/*_${CHIP}.fits | wc | ${P_GAWK} '{print $1}'
++ wc
++ /usr/bin/gawk '{print $1}'
++ ls /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-28-23_Red_0000_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-28-45_Red_0001_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-06_Red_0002_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-28_Red_0003_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-49_Red_0004_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-10_Red_0005_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-32_Red_0006_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-53_Red_0007_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-09_Green_0008_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-29_Green_0009_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-48_Green_0010_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-07_Green_0011_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-27_Green_0012_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-46_Green_0013_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-06_Green_0014_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-26_Green_0015_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-55_Blue_0016_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-35-20_Blue_0017_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-36-34_Blue_0018_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-36-55_Blue_0019_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-15_Blue_0020_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-35_Blue_0021_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-55_Blue_0022_1.fits /home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-38-15_Blue_0023_1.fits
+ numexp=24
+ '[' 24 -lt 3 ']'
+ get_statminsection
+ local xmin
+ local ymin
+ local xmax
+ local ymax
+ '[' _A '!=' _A ']'
+ k=1
+ statminsection=
+ xmax=3358
+ ymax=2536
+ '[' 1 -le 1 ']'
+ '[' 3358 -lt 3358 ']'
+ '[' 2536 -lt 2536 ']'
+ k=2
+ '[' 2 -le 1 ']'
+ xmin=2
+ ymin=2
+ xmax=3357
+ ymax=2535
+ statminsection=2,3357,2,2535
+ '[' 24 -gt 47 ']'
+ '[' N = Y ']'
+ '[' 24 -le 47 ']'
+ '[' N = N ']'
ls /$1/$3/*_${CHIP}.fits
++ ls //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-28-23_Red_0000_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-28-45_Red_0001_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-06_Red_0002_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-28_Red_0003_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-49_Red_0004_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-10_Red_0005_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-32_Red_0006_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-53_Red_0007_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-09_Green_0008_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-29_Green_0009_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-48_Green_0010_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-07_Green_0011_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-27_Green_0012_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-46_Green_0013_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-06_Green_0014_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-26_Green_0015_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-55_Blue_0016_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-35-20_Blue_0017_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-36-34_Blue_0018_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-36-55_Blue_0019_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-15_Blue_0020_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-35_Blue_0021_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-55_Blue_0022_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-38-15_Blue_0023_1.fits
+ /home/albireo/THELI/theli//bin/Linux_64//preprocess //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-28-23_Red_0000_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-28-45_Red_0001_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-06_Red_0002_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-28_Red_0003_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-49_Red_0004_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-10_Red_0005_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-32_Red_0006_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-53_Red_0007_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-09_Green_0008_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-29_Green_0009_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-48_Green_0010_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-07_Green_0011_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-27_Green_0012_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-46_Green_0013_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-06_Green_0014_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-26_Green_0015_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-55_Blue_0016_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-35-20_Blue_0017_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-36-34_Blue_0018_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-36-55_Blue_0019_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-15_Blue_0020_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-35_Blue_0021_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-55_Blue_0022_1.fits //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-38-15_Blue_0023_1.fits -c /home/albireo/THELI/theli//gui/reduction/imred.conf -MAXIMAGES 47 -OVERSCAN N -OVERSCAN_REGION 0,0 -OVERSCAN_REJECT 0,1 -BIAS N -BIAS_IMAGE //home/albireo/14-17.02.2015/rgb//BIAS/BIAS_1.fits -OUTPUT N -OUTPUT_DIR /home/albireo/14-17.02.2015/rgb//flat/ -TRIM Y -OUTPUT_SUFFIX OC.fits -TRIM_REGION 1,3358,1,2536 -COMBINE Y -COMBINE_RESCALE Y -COMBINE_OUTPUT /home/albireo/14-17.02.2015/rgb//flat/flat_1.fits -COMBINE_REJECT 0,1 -STATSSEC 2,3357,2,2535
-> Part 1: Preliminary work:
-> Part 2: performing run processing
	-> 2.1: loading input images for run 1

	loading framelist...: 1 out of 24 
	loading framelist...: 2 out of 24 
	loading framelist...: 3 out of 24 
	loading framelist...: 4 out of 24 
	loading framelist...: 5 out of 24 
	loading framelist...: 6 out of 24 
	loading framelist...: 7 out of 24 
	loading framelist...: 8 out of 24 
	loading framelist...: 9 out of 24 
	loading framelist...: 10 out of 24 
	loading framelist...: 11 out of 24 
	loading framelist...: 12 out of 24 
	loading framelist...: 13 out of 24 
	loading framelist...: 14 out of 24 
	loading framelist...: 15 out of 24 
	loading framelist...: 16 out of 24 
	loading framelist...: 17 out of 24 
	loading framelist...: 18 out of 24 
	loading framelist...: 19 out of 24 
	loading framelist...: 20 out of 24 
	loading framelist...: 21 out of 24 
	loading framelist...: 22 out of 24 
	loading framelist...: 23 out of 24 
	loading framelist...: 24 out of 24 
	-> 2.2: trimming images
-> Part 3: stacking cube with rescaling
	determine median of input frames:
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-28-23_Red_0000_1.fits: 24411.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-28-45_Red_0001_1.fits: 24161.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-06_Red_0002_1.fits: 24070.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-28_Red_0003_1.fits: 23589.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-29-49_Red_0004_1.fits: 23506.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-10_Red_0005_1.fits: 23056.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-32_Red_0006_1.fits: 22713.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-30-53_Red_0007_1.fits: 22518.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-09_Green_0008_1.fits: 27264.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-29_Green_0009_1.fits: 26883.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-32-48_Green_0010_1.fits: 26450.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-07_Green_0011_1.fits: 26093.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-27_Green_0012_1.fits: 25810.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-33-46_Green_0013_1.fits: 25266.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-06_Green_0014_1.fits: 24857.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-26_Green_0015_1.fits: 24440.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-34-55_Blue_0016_1.fits: 19910.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-35-20_Blue_0017_1.fits: 19572.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-36-34_Blue_0018_1.fits: 18303.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-36-55_Blue_0019_1.fits: 17993.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-15_Blue_0020_1.fits: 17759.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-35_Blue_0021_1.fits: 17533.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-37-55_Blue_0022_1.fits: 17239.000000
	Image //home/albireo/14-17.02.2015/rgb//flat/flat16.02.15_2015-02-16_21-38-15_Blue_0023_1.fits: 16943.000000
	mean of medians; 22514.125000
+ get_region
+ regionfile=
+ region=
+ test -f /home/albireo/.theli/tmp//regionfile_1.reg
+ '[' -f /home/albireo/.theli/instruments_user//Moravian10z.reg ']'
+ '[' -f /home/albireo/.theli/instruments_user//Moravian10z_1.reg ']'
+ '[' _A '!=' _A ']'
+ '[' '!' _A = _A ']'
+ '[' /home/albireo/14-17.02.2015/rgb//flat '!=' /home/albireo/14-17.02.2015/rgb//flat ']'
+ rm -f '//home/albireo/14-17.02.2015/rgb//flat/*_1OC.fits'
+ '[' /home/albireo/14-17.02.2015/rgb//flat '!=' /home/albireo/14-17.02.2015/rgb//flat ']'
#!/bin/bash -xv

# this script determines the flux ratios between chips in a 
# flat-field image, to be fed into preprocess.

# $1: main directory
# $2: Flat directory

# preliminary work:
INSTDIR=instruments_professional
+ INSTDIR=instruments_professional
if [ ! -f ${INSTDIR}/${INSTRUMENT}.ini ]; then
    INSTDIR=instruments_commercial
fi
+ '[' '!' -f instruments_professional/Moravian10z.ini ']'
+ INSTDIR=instruments_commercial
if [ ! -f ${INSTDIR}/${INSTRUMENT}.ini ]; then
    INSTDIR=~/.theli/instruments_user/
fi
+ '[' '!' -f instruments_commercial/Moravian10z.ini ']'
+ INSTDIR=/home/albireo/.theli/instruments_user/
. ${INSTDIR}/${INSTRUMENT:?}.ini
+ . /home/albireo/.theli/instruments_user//Moravian10z.ini
# **************************************************************
#            Instrument config file created by THELI
# **************************************************************

# Name of the instrument (must be unique!)
INSTRUMENT=Moravian10z
++ INSTRUMENT=Moravian10z

# Number of chips
NCHIPS=1
++ NCHIPS=1

# We need to export these
export INSTRUMENT
++ export INSTRUMENT
export NCHIPS
++ export NCHIPS

# Load directories for programs
. progs.ini
++ . progs.ini
# If we include this script in bash verbose and trace mode we do not want
# all the (verbose) output from this script:
USE_X=0
+++ USE_X=0
if  [[ ${-/x} != $- ]] ; then
  USE_X=1
  set +xv
fi
+++ [[ hvB != hvxB ]]
+++ USE_X=1
+++ set +xv
#
# this is needed for the GUI
#
P_PIPELIBS=/home/albireo/THELI/PipeLibs//pipe.csh
+++ P_PIPELIBS=/home/albireo/THELI/PipeLibs//pipe.csh
P_GETPMMOBJECTS=${BIN}/get_pmm_objects
+++ P_GETPMMOBJECTS=/home/albireo/THELI/theli//bin/Linux_64//get_pmm_objects
P_LDACDESC=${BIN}/ldacdesc
+++ P_LDACDESC=/home/albireo/THELI/theli//bin/Linux_64//ldacdesc
P_LDACDELTAB=${BIN}/ldacdeltab
+++ P_LDACDELTAB=/home/albireo/THELI/theli//bin/Linux_64//ldacdeltab
P_LDACDELKEY=${BIN}/ldacdelkey
+++ P_LDACDELKEY=/home/albireo/THELI/theli//bin/Linux_64//ldacdelkey
P_LDACPUTXY=${BIN}/ldacputxy
+++ P_LDACPUTXY=/home/albireo/THELI/theli//bin/Linux_64//ldacputxy
P_FITSFLIP=${BIN}/fitsflip
+++ P_FITSFLIP=/home/albireo/THELI/theli//bin/Linux_64//fitsflip
P_DEBLOOM=${BIN}/debloom
+++ P_DEBLOOM=/home/albireo/THELI/theli//bin/Linux_64//debloom
P_EQUALISEBAYERFLAT=${BIN}/equalisebayerflat
+++ P_EQUALISEBAYERFLAT=/home/albireo/THELI/theli//bin/Linux_64//equalisebayerflat
P_FITSCOLLAPSE=${BIN}/fitscollapse
+++ P_FITSCOLLAPSE=/home/albireo/THELI/theli//bin/Linux_64//fitscollapse
P_FITSWRAP=${BIN}/fitswrap
+++ P_FITSWRAP=/home/albireo/THELI/theli//bin/Linux_64//fitswrap
P_FITSCUBESLICE=${BIN}/fitscubeslice
+++ P_FITSCUBESLICE=/home/albireo/THELI/theli//bin/Linux_64//fitscubeslice
P_FITSADDKEY=${BIN}/fitsaddkey
+++ P_FITSADDKEY=/home/albireo/THELI/theli//bin/Linux_64//fitsaddkey
P_FITSCUT=${BIN}/fitscut
+++ P_FITSCUT=/home/albireo/THELI/theli//bin/Linux_64//fitscut
P_FITSBIN=${BIN}/fitsbin
+++ P_FITSBIN=/home/albireo/THELI/theli//bin/Linux_64//fitsbin
P_FITSBLOOMDETECT=${BIN}/fitsbloomdetect
+++ P_FITSBLOOMDETECT=/home/albireo/THELI/theli//bin/Linux_64//fitsbloomdetect
P_FITSFILL=${BIN}/fitsfill
+++ P_FITSFILL=/home/albireo/THELI/theli//bin/Linux_64//fitsfill
P_FITSGRAD=${BIN}/fitsgrad
+++ P_FITSGRAD=/home/albireo/THELI/theli//bin/Linux_64//fitsgrad
P_FITSDEMOSAICBAYER=${BIN}/fitsdemosaicbayer
+++ P_FITSDEMOSAICBAYER=/home/albireo/THELI/theli//bin/Linux_64//fitsdemosaicbayer
P_FITS3MAX=${BIN}/fits3max
+++ P_FITS3MAX=/home/albireo/THELI/theli//bin/Linux_64//fits3max
P_FITSGAUSS=${BIN}/fitsgauss
+++ P_FITSGAUSS=/home/albireo/THELI/theli//bin/Linux_64//fitsgauss
P_FITS2TIFF=${BIN}/fits2tiff
+++ P_FITS2TIFF=/home/albireo/THELI/theli//bin/Linux_64//fits2tiff
P_TIFF2FITS=${BIN}/tiff2fits
+++ P_TIFF2FITS=/home/albireo/THELI/theli//bin/Linux_64//tiff2fits
P_CORRLIRIS=${BIN}/corrliris
+++ P_CORRLIRIS=/home/albireo/THELI/theli//bin/Linux_64//corrliris
P_CROSSTALK=${BIN}/crosstalk
+++ P_CROSSTALK=/home/albireo/THELI/theli//bin/Linux_64//crosstalk
P_FINDGSC=${BIN}/findgsc
+++ P_FINDGSC=/home/albireo/THELI/theli//bin/Linux_64//findgsc
P_FINDUSNOB1=${BIN}/findusnob1
+++ P_FINDUSNOB1=/home/albireo/THELI/theli//bin/Linux_64//findusnob1
P_FIND2MASS=${BIN}/find2mass
+++ P_FIND2MASS=/home/albireo/THELI/theli//bin/Linux_64//find2mass
P_FINDSDSS7=${BIN}/findsdss7
+++ P_FINDSDSS7=/home/albireo/THELI/theli//bin/Linux_64//findsdss7
P_FINDUCAC3=${BIN}/finducac3
+++ P_FINDUCAC3=/home/albireo/THELI/theli//bin/Linux_64//finducac3
P_FINDNOMAD1=${BIN}/findnomad1
+++ P_FINDNOMAD1=/home/albireo/THELI/theli//bin/Linux_64//findnomad1
P_VIZQUERY=${BIN}/vizquery
+++ P_VIZQUERY=/home/albireo/THELI/theli//bin/Linux_64//vizquery
P_SESAME=${BIN}/sesame
+++ P_SESAME=/home/albireo/THELI/theli//bin/Linux_64//sesame
P_ACLIENT=${BIN}/aclient
+++ P_ACLIENT=/home/albireo/THELI/theli//bin/Linux_64//aclient
P_SCAMP=${BIN}/scamp
+++ P_SCAMP=/home/albireo/THELI/theli//bin/Linux_64//scamp
P_RENAME=${BIN}/rename
+++ P_RENAME=/home/albireo/THELI/theli//bin/Linux_64//rename
P_MISSFITS=${BIN}/missfits
+++ P_MISSFITS=/home/albireo/THELI/theli//bin/Linux_64//missfits
P_SWARPFILTER=${BIN}/swarpfilter
+++ P_SWARPFILTER=/home/albireo/THELI/theli//bin/Linux_64//swarpfilter
P_FITSBLOCKEDIT=${BIN}/fitsblockedit
+++ P_FITSBLOCKEDIT=/home/albireo/THELI/theli//bin/Linux_64//fitsblockedit
P_FITSMASK=${BIN}/fitsmask
+++ P_FITSMASK=/home/albireo/THELI/theli//bin/Linux_64//fitsmask
P_FITSMEDIAN=${BIN}/fitsmedian
+++ P_FITSMEDIAN=/home/albireo/THELI/theli//bin/Linux_64//fitsmedian
P_FITSNANMASK=${BIN}/fitsnanmask
+++ P_FITSNANMASK=/home/albireo/THELI/theli//bin/Linux_64//fitsnanmask
P_FITSSTAT=${BIN}/fitsstat
+++ P_FITSSTAT=/home/albireo/THELI/theli//bin/Linux_64//fitsstat
P_FITSSPLITBAYER=${BIN}/fitssplitbayer
+++ P_FITSSPLITBAYER=/home/albireo/THELI/theli//bin/Linux_64//fitssplitbayer
P_FITSGUESSGEOM=${BIN}/fitsguessgeom
+++ P_FITSGUESSGEOM=/home/albireo/THELI/theli//bin/Linux_64//fitsguessgeom
P_SPLITSUPRIMECAM=${BIN}/splitsuprimecam
+++ P_SPLITSUPRIMECAM=/home/albireo/THELI/theli//bin/Linux_64//splitsuprimecam
P_PASTEDUALCHANNEL=${BIN}/paste_dualchannel
+++ P_PASTEDUALCHANNEL=/home/albireo/THELI/theli//bin/Linux_64//paste_dualchannel
P_PASTEQUADCHANNEL=${BIN}/paste_quadchannel
+++ P_PASTEQUADCHANNEL=/home/albireo/THELI/theli//bin/Linux_64//paste_quadchannel
P_SPLITGMOSMULTIPORT=${BIN}/split_gmos_multiport
+++ P_SPLITGMOSMULTIPORT=/home/albireo/THELI/theli//bin/Linux_64//split_gmos_multiport
P_SPLITGROND=${BIN}/split_grond
+++ P_SPLITGROND=/home/albireo/THELI/theli//bin/Linux_64//split_grond
P_GETSHIFT=${BIN}/get_shift
+++ P_GETSHIFT=/home/albireo/THELI/theli//bin/Linux_64//get_shift
P_FITSNONLINEARITY=${BIN}/fitsnonlinearity
+++ P_FITSNONLINEARITY=/home/albireo/THELI/theli//bin/Linux_64//fitsnonlinearity
P_FITSPIC=${BIN}/fitspic
+++ P_FITSPIC=/home/albireo/THELI/theli//bin/Linux_64//fitspic
P_FITSPOLYGON=${BIN}/fitspolygon
+++ P_FITSPOLYGON=/home/albireo/THELI/theli//bin/Linux_64//fitspolygon
P_EXPANDSEXMASK=${BIN}/expand_sexmask
+++ P_EXPANDSEXMASK=/home/albireo/THELI/theli//bin/Linux_64//expand_sexmask
P_DCRAW=${BIN}/dcraw
+++ P_DCRAW=/home/albireo/THELI/theli//bin/Linux_64//dcraw
P_DECSEXCONV=${BIN}/decsexconv
+++ P_DECSEXCONV=/home/albireo/THELI/theli//bin/Linux_64//decsexconv
P_STIFF=${BIN}/stiff
+++ P_STIFF=/home/albireo/THELI/theli//bin/Linux_64//stiff
P_SUBSKY=${BIN}/subsky
+++ P_SUBSKY=/home/albireo/THELI/theli//bin/Linux_64//subsky
P_GIFSICLE=${BIN}/gifsicle
+++ P_GIFSICLE=/home/albireo/THELI/theli//bin/Linux_64//gifsicle
P_XY2SKY=${BIN}/xy2sky
+++ P_XY2SKY=/home/albireo/THELI/theli//bin/Linux_64//xy2sky
P_SKY2XY=${BIN}/sky2xy
+++ P_SKY2XY=/home/albireo/THELI/theli//bin/Linux_64//sky2xy
P_ISFITS=${BIN}/isfits
+++ P_ISFITS=/home/albireo/THELI/theli//bin/Linux_64//isfits
P_GETKEY=${BIN}/getkey
+++ P_GETKEY=/home/albireo/THELI/theli//bin/Linux_64//getkey
P_SKY2XY_HELPER=${BIN}/sky2xy_helper
+++ P_SKY2XY_HELPER=/home/albireo/THELI/theli//bin/Linux_64//sky2xy_helper
P_GET_ROTIMSIZE=${BIN}/get_rotimsize
+++ P_GET_ROTIMSIZE=/home/albireo/THELI/theli//bin/Linux_64//get_rotimsize
P_CLEANSTRING=${BIN}/cleanstring
+++ P_CLEANSTRING=/home/albireo/THELI/theli//bin/Linux_64//cleanstring
P_NUMCPU=${BIN}/numcpu
+++ P_NUMCPU=/home/albireo/THELI/theli//bin/Linux_64//numcpu
P_GETSTATS=${BIN}/getstats
+++ P_GETSTATS=/home/albireo/THELI/theli//bin/Linux_64//getstats
P_CDELT2CD=${BIN}/cdelt2cd
+++ P_CDELT2CD=/home/albireo/THELI/theli//bin/Linux_64//cdelt2cd
P_GETCDMATRIX=${BIN}/get_cdmatrix
+++ P_GETCDMATRIX=/home/albireo/THELI/theli//bin/Linux_64//get_cdmatrix
P_GETPIXSCALE=${BIN}/get_pixscale
+++ P_GETPIXSCALE=/home/albireo/THELI/theli//bin/Linux_64//get_pixscale
P_GETPOSANGLE=${BIN}/get_posangle
+++ P_GETPOSANGLE=/home/albireo/THELI/theli//bin/Linux_64//get_posangle
P_GETREFCATRADIUS=${BIN}/get_refcat_radius
+++ P_GETREFCATRADIUS=/home/albireo/THELI/theli//bin/Linux_64//get_refcat_radius
P_MERGEDAT=${BIN}/mergedat
+++ P_MERGEDAT=/home/albireo/THELI/theli//bin/Linux_64//mergedat
P_ROTATECDMATRIX=${BIN}/rotate_cdmatrix
+++ P_ROTATECDMATRIX=/home/albireo/THELI/theli//bin/Linux_64//rotate_cdmatrix
P_BACKGROUNDDYNAMIC=${BIN}/background_dynamic
+++ P_BACKGROUNDDYNAMIC=/home/albireo/THELI/theli//bin/Linux_64//background_dynamic
P_BACKGROUNDSTATIC=${BIN}/background_static
+++ P_BACKGROUNDSTATIC=/home/albireo/THELI/theli//bin/Linux_64//background_static
P_MJD=${BIN}/mjd
+++ P_MJD=/home/albireo/THELI/theli//bin/Linux_64//mjd
P_LST=${BIN}/lst
+++ P_LST=/home/albireo/THELI/theli//bin/Linux_64//lst
P_IMALYZER=${BIN}/imalyzer
+++ P_IMALYZER=/home/albireo/THELI/theli//bin/Linux_64//imalyzer
P_E2ELL=${BIN}/e2ell
+++ P_E2ELL=/home/albireo/THELI/theli//bin/Linux_64//e2ell
P_FITSSMOOTHEDGE=${BIN}/fitssmoothedge
+++ P_FITSSMOOTHEDGE=/home/albireo/THELI/theli//bin/Linux_64//fitssmoothedge
P_FITSEXTRACTEXT=${BIN}/fitsextractext
+++ P_FITSEXTRACTEXT=/home/albireo/THELI/theli//bin/Linux_64//fitsextractext
P_ERRTEST=${BIN}/errtest
+++ P_ERRTEST=/home/albireo/THELI/theli//bin/Linux_64//errtest
P_BUILDINDEX=${BIN_ANET}/build-astrometry-index
+++ P_BUILDINDEX=/home/albireo/THELI/theli//gui/packages/astrometry/build/bin//build-astrometry-index
P_SOLVEFIELD=${BIN_ANET}/solve-field
+++ P_SOLVEFIELD=/home/albireo/THELI/theli//gui/packages/astrometry/build/bin//solve-field
P_XCORR=${BIN}/xcorr
+++ P_XCORR=/home/albireo/THELI/theli//bin/Linux_64//xcorr
#
# load the parameter files
#
. ~/.theli/param_set1.ini
+++ . /home/albireo/.theli/param_set1.ini
PROJECTNAME=Pferdekopf
++++ PROJECTNAME=Pferdekopf
NPARA=1
++++ NPARA=1
GUIVERSION=2.9.5
++++ GUIVERSION=2.9.5
KERNEL=Linux
++++ KERNEL=Linux
NFRAMES=47
++++ NFRAMES=47
V_PRE_SPLITMIRCUBE=N
++++ V_PRE_SPLITMIRCUBE=N
V_DO_BIAS=N
++++ V_DO_BIAS=N
V_DO_FLAT=Y
++++ V_DO_FLAT=Y
V_NONLINCORR=N
++++ V_NONLINCORR=N
V_AP_SERVER=vizier.u-strasbg.fr
++++ V_AP_SERVER=vizier.u-strasbg.fr
V_AP_MAGLIM=20
++++ V_AP_MAGLIM=20
V_AP_RADIUS=30
++++ V_AP_RADIUS=30
V_AP_REFRA=header
++++ V_AP_REFRA=header
V_AP_REFDEC=header
++++ V_AP_REFDEC=header
. ~/.theli/param_set2.ini
+++ . /home/albireo/.theli/param_set2.ini
V_PRE_RENAME_CHECKED=0
++++ V_PRE_RENAME_CHECKED=0
V_RENAME_FITSKEY=ARCFILE
++++ V_RENAME_FITSKEY=ARCFILE
V_SORT_FITSKEY=OBJECT
++++ V_SORT_FITSKEY=OBJECT
V_SORT_BIAS=
++++ V_SORT_BIAS=
V_SORT_DARK=
++++ V_SORT_DARK=
V_SORT_DOMEFLAT=
++++ V_SORT_DOMEFLAT=
V_SORT_SKYFLAT=
++++ V_SORT_SKYFLAT=
V_SORT_STD=
++++ V_SORT_STD=
V_PRE_XTALK_NOR_CHECKED=0
++++ V_PRE_XTALK_NOR_CHECKED=0
V_PRE_XTALK_ROW_CHECKED=0
++++ V_PRE_XTALK_ROW_CHECKED=0
V_PRE_XTALK_MULTI_CHECKED=0
++++ V_PRE_XTALK_MULTI_CHECKED=0
V_PRE_XTALK_NOR_AMPLITUDE=
++++ V_PRE_XTALK_NOR_AMPLITUDE=
V_PRE_XTALK_ROW_AMPLITUDE=
++++ V_PRE_XTALK_ROW_AMPLITUDE=
V_PRE_XTALK_NOR_BUTTONID=-1
++++ V_PRE_XTALK_NOR_BUTTONID=-1
V_PRE_XTALK_ROW_BUTTONID=-1
++++ V_PRE_XTALK_ROW_BUTTONID=-1
V_PRE_XTALK_MULTI_BUTTONID=-1
++++ V_PRE_XTALK_MULTI_BUTTONID=-1
V_PRE_XTALK_MULTI_NSECTION=
++++ V_PRE_XTALK_MULTI_NSECTION=
V_CAL_OVSCANNLOW=0
++++ V_CAL_OVSCANNLOW=0
V_CAL_OVSCANNHIGH=1
++++ V_CAL_OVSCANNHIGH=1
V_CAL_BIASNLOW=0
++++ V_CAL_BIASNLOW=0
V_CAL_BIASNHIGH=1
++++ V_CAL_BIASNHIGH=1
V_CAL_DARKNLOW=0
++++ V_CAL_DARKNLOW=0
V_CAL_DARKNHIGH=1
++++ V_CAL_DARKNHIGH=1
V_CAL_FLATNLOW=0
++++ V_CAL_FLATNLOW=0
V_CAL_FLATNHIGH=1
++++ V_CAL_FLATNHIGH=1
V_CAL_USEDARK=FALSE
++++ V_CAL_USEDARK=FALSE
V_BACK_NLOW=0
++++ V_BACK_NLOW=0
V_BACK_NHIGH=1
++++ V_BACK_NHIGH=1
V_BACK_DETECTTHRESH=1.3
++++ V_BACK_DETECTTHRESH=1.3
V_BACK_DETECTMINAREA=5
++++ V_BACK_DETECTMINAREA=5
V_BACK_MASKEXPAND=
++++ V_BACK_MASKEXPAND=
V_BACK_ILLUMSMOOTH=
++++ V_BACK_ILLUMSMOOTH=
V_BACK_FRINGESMOOTH=
++++ V_BACK_FRINGESMOOTH=
V_BACK_WINDOWSIZE=0
++++ V_BACK_WINDOWSIZE=0
V_BACK_GAPSIZE=1.0
++++ V_BACK_GAPSIZE=1.0
V_BACK_APPLYMODE=0
++++ V_BACK_APPLYMODE=0
V_BACK_COMBINEMETHOD=0
++++ V_BACK_COMBINEMETHOD=0
V_BACK_SEXFILTER=Y
++++ V_BACK_SEXFILTER=Y
V_BACK_ADJUSTGAINS=N
++++ V_BACK_ADJUSTGAINS=N
V_BACK_FRINGESCALE=Y
++++ V_BACK_FRINGESCALE=Y
V_BACK_SKY2PASS=Y
++++ V_BACK_SKY2PASS=Y
V_COLLDETECTTHRESH=
++++ V_COLLDETECTTHRESH=
V_COLLDETECTMINAREA=
++++ V_COLLDETECTMINAREA=
V_COLLMASKEXPAND=
++++ V_COLLMASKEXPAND=
V_COLLREJECTTHRESH=1.5
++++ V_COLLREJECTTHRESH=1.5
V_COLLDIRECTION=x
++++ V_COLLDIRECTION=x
V_COLLXMIN=
++++ V_COLLXMIN=
V_COLLXMAX=
++++ V_COLLXMAX=
V_COLLYMIN=
++++ V_COLLYMIN=
V_COLLYMAX=
++++ V_COLLYMAX=
V_COLLMASKACTION=1
++++ V_COLLMASKACTION=1
V_COLLAUTOTHRESHOLD=0
++++ V_COLLAUTOTHRESHOLD=0
V_WEIGHTBINMIN=-100
++++ V_WEIGHTBINMIN=-100
V_WEIGHTBINMAX=500
++++ V_WEIGHTBINMAX=500
V_WEIGHTBINSIZE=4
++++ V_WEIGHTBINSIZE=4
V_WEIGHTLOWTHRESHOLD=
++++ V_WEIGHTLOWTHRESHOLD=
V_WEIGHTHIGHTHRESHOLD=
++++ V_WEIGHTHIGHTHRESHOLD=
V_GLOBWFLATMIN=0.5
++++ V_GLOBWFLATMIN=0.5
V_GLOBWFLATMAX=1.6
++++ V_GLOBWFLATMAX=1.6
V_GLOBWDARKMIN=
++++ V_GLOBWDARKMIN=
V_GLOBWDARKMAX=
++++ V_GLOBWDARKMAX=
V_GLOBWDARKDIR=
++++ V_GLOBWDARKDIR=
V_COSMICSTHRESHOLD=0.1
++++ V_COSMICSTHRESHOLD=0.1
V_COSMICDT=6
++++ V_COSMICDT=6
V_COSMICDMIN=1
++++ V_COSMICDMIN=1
V_DEFECT_KERNELSIZE=
++++ V_DEFECT_KERNELSIZE=
V_DEFECT_ROWTOL=
++++ V_DEFECT_ROWTOL=
V_DEFECT_COLTOL=
++++ V_DEFECT_COLTOL=
V_DEFECT_CLUSTOL=
++++ V_DEFECT_CLUSTOL=
V_DEFECT_KERNELSIZE_SF=
++++ V_DEFECT_KERNELSIZE_SF=
V_DEFECT_ROWTOL_SF=
++++ V_DEFECT_ROWTOL_SF=
V_DEFECT_COLTOL_SF=
++++ V_DEFECT_COLTOL_SF=
V_DEFECT_CLUSTOL_SF=
++++ V_DEFECT_CLUSTOL_SF=
V_BLOOMLOWLIMIT=20000
++++ V_BLOOMLOWLIMIT=20000
V_BLOOMMINAREA=100
++++ V_BLOOMMINAREA=100
V_BLOOMWIDTH=0
++++ V_BLOOMWIDTH=0
V_WEIGHT_BINOUTLIER=FALSE
++++ V_WEIGHT_BINOUTLIER=FALSE
V_GLOBW_UNIFORMWEIGHT=FALSE
++++ V_GLOBW_UNIFORMWEIGHT=FALSE
V_MASKBLOOMSPIKE=0
++++ V_MASKBLOOMSPIKE=0
V_AP_DETECTTHRESH=5.0
++++ V_AP_DETECTTHRESH=5.0
V_AP_DETECTMINAREA=5
++++ V_AP_DETECTMINAREA=5
V_DEBLENDMINCONT=0.0005
++++ V_DEBLENDMINCONT=0.0005
V_AP_LOWNUM=1
++++ V_AP_LOWNUM=1
V_SEXCATMINFWHM=1.5
++++ V_SEXCATMINFWHM=1.5
V_SEXCATFLAG=0
++++ V_SEXCATFLAG=0
V_SATURATION=
++++ V_SATURATION=
V_SEXBACKLEVEL=
++++ V_SEXBACKLEVEL=
V_AP_FILTER=N
++++ V_AP_FILTER=N
V_SCAMP_MAXPOSANGLE=2.0
++++ V_SCAMP_MAXPOSANGLE=2.0
V_SCAMP_MAXOFFSET=2.0
++++ V_SCAMP_MAXOFFSET=2.0
V_SCAMP_MAXSCALE=1.05
++++ V_SCAMP_MAXSCALE=1.05
V_SCAMP_SNLOW=5
++++ V_SCAMP_SNLOW=5
V_SCAMP_SNHIGH=20
++++ V_SCAMP_SNHIGH=20
V_SCAMP_FGROUPRADIUS=1.0
++++ V_SCAMP_FGROUPRADIUS=1.0
V_SCAMP_CROSSIDRADIUS=0
++++ V_SCAMP_CROSSIDRADIUS=0
V_SCAMP_ASTREFWEIGHT=1.0
++++ V_SCAMP_ASTREFWEIGHT=1.0
V_SCAMP_ASTRINSTRUKEY=FILTER
++++ V_SCAMP_ASTRINSTRUKEY=FILTER
V_SCAMP_PHOTINSTRUKEY=FILTER
++++ V_SCAMP_PHOTINSTRUKEY=FILTER
V_SCAMP_POLYORDER=3
++++ V_SCAMP_POLYORDER=3
V_SCAMP_POLYORDER2=
++++ V_SCAMP_POLYORDER2=
V_SCAMP_DISTORTGROUPS=
++++ V_SCAMP_DISTORTGROUPS=
V_SCAMP_DISTORTKEYS=
++++ V_SCAMP_DISTORTKEYS=
V_SCAMP_STABILITY=INSTRUMENT
++++ V_SCAMP_STABILITY=INSTRUMENT
V_SCAMP_MOSAICTYPE=UNCHANGED
++++ V_SCAMP_MOSAICTYPE=UNCHANGED
V_SCAMP_FOCALPLANE=DEFAULT
++++ V_SCAMP_FOCALPLANE=DEFAULT
V_SCAMP_MATCHFLIPPED=N
++++ V_SCAMP_MATCHFLIPPED=N
V_SCAMP_MATCHWCS=Y
++++ V_SCAMP_MATCHWCS=Y
V_ANET_MAXSCALE=1.05
++++ V_ANET_MAXSCALE=1.05
V_ANET_POLYORDER=3
++++ V_ANET_POLYORDER=3
V_ANET_SCAMPDISTORT=N
++++ V_ANET_SCAMPDISTORT=N
V_ABSPHOT_FILTER=B
++++ V_ABSPHOT_FILTER=B
V_ABSPHOT_COLORFIXED=0.1
++++ V_ABSPHOT_COLORFIXED=0.1
V_ABSPHOT_EXTINCTION=0
++++ V_ABSPHOT_EXTINCTION=0
V_ABSPHOT_ZPMIN=24
++++ V_ABSPHOT_ZPMIN=24
V_ABSPHOT_ZPMAX=25
++++ V_ABSPHOT_ZPMAX=25
V_ABSPHOT_STDMINMAG=0.0
++++ V_ABSPHOT_STDMINMAG=0.0
V_ABSPHOT_MAXPHOTERR=0.05
++++ V_ABSPHOT_MAXPHOTERR=0.05
V_ABSPHOT_WCSERR=10
++++ V_ABSPHOT_WCSERR=10
V_ABSPHOT_WCSERRCHECKBOX=Y
++++ V_ABSPHOT_WCSERRCHECKBOX=Y
V_ABSPHOT_STDCAT_DIRECT=SDSS
++++ V_ABSPHOT_STDCAT_DIRECT=SDSS
V_ABSPHOT_STDFILTERM2=u
++++ V_ABSPHOT_STDFILTERM2=u
V_ABSPHOT_STDCAT_INDIRECT=LANDOLT_UBVRI
++++ V_ABSPHOT_STDCAT_INDIRECT=LANDOLT_UBVRI
V_ABSPHOT_STDFILTER=U
++++ V_ABSPHOT_STDFILTER=U
V_ABSPHOT_STDCOLOR=UmB
++++ V_ABSPHOT_STDCOLOR=UmB
V_ABSPHOT_CALMODE=RUNCALIB
++++ V_ABSPHOT_CALMODE=RUNCALIB
V_ABSPHOT_FITTINGMETHODM2=CHIP
++++ V_ABSPHOT_FITTINGMETHODM2=CHIP
V_COADD_REFRA=
++++ V_COADD_REFRA=
V_COADD_REFDEC=
++++ V_COADD_REFDEC=
V_COADD_IDENT=(null)
++++ V_COADD_IDENT=(null)
V_COADD_SEEING=
++++ V_COADD_SEEING=
V_COADD_RZP=
++++ V_COADD_RZP=
V_COADD_PIXSCALE=0.89
++++ V_COADD_PIXSCALE=0.89
V_COADD_SIZEX=
++++ V_COADD_SIZEX=
V_COADD_SIZEY=
++++ V_COADD_SIZEY=
V_COADD_SKYPOSANGLE=
++++ V_COADD_SKYPOSANGLE=
V_COADD_CHIPS=""
++++ V_COADD_CHIPS=
V_COADD_FILTERTHRESHOLD=
++++ V_COADD_FILTERTHRESHOLD=
V_COADD_FILTERCLUSTERSIZE=
++++ V_COADD_FILTERCLUSTERSIZE=
V_COADD_FILTERBORDERWIDTH=
++++ V_COADD_FILTERBORDERWIDTH=
V_COADD_SMOOTHEDGE=
++++ V_COADD_SMOOTHEDGE=
V_COADD_PROPMOTIONRA=
++++ V_COADD_PROPMOTIONRA=
V_COADD_PROPMOTIONDEC=
++++ V_COADD_PROPMOTIONDEC=
V_COADD_KERNEL=LANCZOS3
++++ V_COADD_KERNEL=LANCZOS3
V_COADD_FILTER=
++++ V_COADD_FILTER=
V_COADD_PROJECTION=TAN
++++ V_COADD_PROJECTION=TAN
V_COADD_CELESTIALTYPE=EQUATORIAL
++++ V_COADD_CELESTIALTYPE=EQUATORIAL
V_COADD_COMBINETYPE=WEIGHTED
++++ V_COADD_COMBINETYPE=WEIGHTED
. ~/.theli/param_set3.ini
+++ . /home/albireo/.theli/param_set3.ini

# Geographical latitude of the observatory
OBSLAT=
++ OBSLAT=

# Pixel scale in x and y [degrees] (CDELT1/2 keywords)
PIXSCX=-0
++ PIXSCX=-0
PIXSCY=0
++ PIXSCY=0

# Pixel scale in arcsec
PIXSCALE=
++ PIXSCALE=

# Detector gain
GAIN=1.0
++ GAIN=1.0

# Overscan regions. The values are the x-range.
# The min is given by OVSCANX1, the max by OVSCANX2.
# We need separate regions for each chip.

OVSCANX1=([1]=0)
++ OVSCANX1=([1]=0)
OVSCANX2=([1]=0)
++ OVSCANX2=([1]=0)

# Sections for the cutting. Select those pixels that receive light.
# Give min values for x and y, and the extent in x and y.

CUTX=([1]=1)
++ CUTX=([1]=1)
CUTY=([1]=1)
++ CUTY=([1]=1)
SIZEX=([1]=3358)
++ SIZEX=([1]=3358)
SIZEY=([1]=2536)
++ SIZEY=([1]=2536)

# Reference pixels for each chip.

REFPIXX=([1]=100)
++ REFPIXX=([1]=100)
REFPIXY=([1]=100)
++ REFPIXY=([1]=100)

# Camera type
TYPE=OPT
++ TYPE=OPT


. bash.include
+ . bash.include
function get_wcs {

  local k

  k=1
  cd11=""
  cd12=""
  cd21=""
  cd22=""
  cpx1=""
  cpx2=""

  while [ "${k}" -le "${NCHIPS}" ]
  do
    if [ "${NCHIPS}" = "1" ]; then
       ext=0
    else
       ext=${k}
    fi

    # test if the CD matrix is present
    testcd=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CD1_1 | ${P_GAWK} '(NR==2) {print $2}'`
    testcdelt=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CDELT1 | ${P_GAWK} '(NR==2) {print $2}'`
    testcdelt2=`echo ${testcdelt} | ${P_GAWK} '{if ($1>=1) print "bad"; else print "good"}'`
    if [ "${testcd}"_A != "_A" ] && [ "${testcd}" != "KEY_N/A" ]; then
        cdmatrix=`${P_DFITS} -x ${ext} ${FILE} | \
	          ${P_FITSORT} CD1_1 CD1_2 CD2_1 CD2_2 | \
                  ${P_GAWK} '($1!="FILE") {print $2, $3, $4, $5}'`
    else
	if [ "${testcdelt}"_A != "_A" ] && [ "${testcdelt}" != "KEY_N/A" ] && [ "${testcdelt2}" = "good" ] ; then
           cdmatrix=`${P_DFITS} -x ${ext} ${FILE} | \
                  ${P_FITSORT} CDELT1 CDELT2 | \
		  ${P_GAWK} '($1!="FILE") {print $2, "0.0", "0.0", $3}'`
    	else
           cdmatrix="${PIXSCX} 0.0 0.0 ${PIXSCY}"
        fi
    fi

    # test if the reference pixel is present
    testcrpix=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CRPIX1 | ${P_GAWK} '(NR==2) {print $2}'`
    if [ "${testcrpix}"_A != "_A" ] && [ "${testcrpix}" != "KEY_N/A" ]; then
        refpixel=`${P_DFITS} -x ${ext} ${FILE} | \
	          ${P_FITSORT} CRPIX1 CRPIX2 | \
                  ${P_GAWK} '($1!="FILE") {print $2, $3}'`
    else
	rpix1=${REFPIXX[${k}]}
	rpix2=${REFPIXY[${k}]}
	if [ "${rpix1}_A" = "_A" ]; then
	   rpix1=1
	fi	   
	if [ "${rpix2}_A" = "_A" ]; then
	   rpix2=1
	fi   
        refpixel="${rpix1} ${rpix2}"
    fi

    c11=`echo ${cdmatrix} | ${P_GAWK} '{print $1}'`
    c12=`echo ${cdmatrix} | ${P_GAWK} '{print $2}'`
    c21=`echo ${cdmatrix} | ${P_GAWK} '{print $3}'`
    c22=`echo ${cdmatrix} | ${P_GAWK} '{print $4}'`
    cr1=`echo ${refpixel} | ${P_GAWK} '{print $1}'`
    cr2=`echo ${refpixel} | ${P_GAWK} '{print $2}'`
    if [ "${k}" = "1" ]; then
       cd11="${c11}"
       cd12="${c12}"
       cd21="${c21}"
       cd22="${c22}"
       cpx1="${cr1}"
       cpx2="${cr2}"
    else
       cd11="${cd11},${c11}"
       cd12="${cd12},${c12}"
       cd21="${cd21},${c21}"
       cd22="${cd22},${c22}"
       cpx1="${cpx1},${cr1}"
       cpx2="${cpx2},${cr2}"
    fi

    k=$(( $k + 1 ))
  done
}

function get_wcsext {

  local k

  k=1
  cd11=""
  cd12=""
  cd21=""
  cd22=""
  cpx1=""
  cpx2=""

  while [ "${k}" -le "${NCHIPS}" ]
  do
    ext=1

    # test if the CD matrix is present
    testcd=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CD1_1 | ${P_GAWK} '(NR==2) {print $2}'`
    testcdelt=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CDELT1 | ${P_GAWK} '(NR==2) {print $2}'`
    testcdelt2=`echo ${testcdelt} | ${P_GAWK} '{if ($1>=1) print "bad"; else print "good"}'`
    if [ "${testcd}"_A != "_A" ] && [ "${testcd}" != "KEY_N/A" ]; then
        cdmatrix=`${P_DFITS} -x ${ext} ${FILE} | \
	          ${P_FITSORT} CD1_1 CD1_2 CD2_1 CD2_2 | \
                  ${P_GAWK} '($1!="FILE") {print $2, $3, $4, $5}'`
    else
	if [ "${testcdelt}"_A != "_A" ] && [ "${testcdelt}" != "KEY_N/A" ] && [ "${testcdelt2}" = "good" ] ; then
           cdmatrix=`${P_DFITS} -x ${ext} ${FILE} | \
                  ${P_FITSORT} CDELT1 CDELT2 | \
		  ${P_GAWK} '($1!="FILE") {print $2, "0.0", "0.0", $3}'`
    	else
           cdmatrix="${PIXSCX} 0.0 0.0 ${PIXSCY}"
        fi
    fi

    # test if the reference pixel is present
    testcrpix=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CRPIX1 | ${P_GAWK} '(NR==2) {print $2}'`
    if [ "${testcrpix}"_A != "_A" ] && [ "${testcrpix}" != "KEY_N/A" ]; then
        refpixel=`${P_DFITS} -x ${ext} ${FILE} | \
	          ${P_FITSORT} CRPIX1 CRPIX2 | \
                  ${P_GAWK} '($1!="FILE") {print $2, $3}'`
    else
	rpix1=${REFPIXX[${k}]}
	rpix2=${REFPIXY[${k}]}
	if [ "${rpix1}_A" = "_A" ]; then
	   rpix1=1
	fi	   
	if [ "${rpix2}_A" = "_A" ]; then
	   rpix2=1
	fi   
        refpixel="${rpix1} ${rpix2}"
    fi

    c11=`echo ${cdmatrix} | ${P_GAWK} '{print $1}'`
    c12=`echo ${cdmatrix} | ${P_GAWK} '{print $2}'`
    c21=`echo ${cdmatrix} | ${P_GAWK} '{print $3}'`
    c22=`echo ${cdmatrix} | ${P_GAWK} '{print $4}'`
    cr1=`echo ${refpixel} | ${P_GAWK} '{print $1}'`
    cr2=`echo ${refpixel} | ${P_GAWK} '{print $2}'`
    if [ "${k}" = "1" ]; then
       cd11="${c11}"
       cd12="${c12}"
       cd21="${c21}"
       cd22="${c22}"
       cpx1="${cr1}"
       cpx2="${cr2}"
    else
       cd11="${cd11},${c11}"
       cd12="${cd12},${c12}"
       cd21="${cd21},${c21}"
       cd22="${cd22},${c22}"
       cpx1="${cpx1},${cr1}"
       cpx2="${cpx2},${cr2}"
    fi

    k=$(( $k + 1 ))
  done
}



function get_statminsection {
	 
  local xmin
  local ymin
  local xmax
  local ymax

  if  [ "${STATXMIN[${CHIP}]}"_A != "_A" ] && \
      [ "${STATXMAX[${CHIP}]}"_A != "_A" ] && \
      [ "${STATYMIN[${CHIP}]}"_A != "_A" ] && \
      [ "${STATYMAX[${CHIP}]}"_A != "_A" ]; then
      xmin=${STATXMIN[${CHIP}]}
      xmax=${STATXMAX[${CHIP}]}
      ymin=${STATYMIN[${CHIP}]}
      ymax=${STATYMAX[${CHIP}]}
  else
    k=1
    statminsection=""
    xmax=${SIZEX[1]}
    ymax=${SIZEY[1]}

    while [ "${k}" -le "${NCHIPS}" ]
    do
	if [ ${SIZEX[k]} -lt ${xmax} ]; then
       	    xmax=${SIZEX[k]}
    	fi
    	if [ ${SIZEY[k]} -lt ${ymax} ]; then
       	    ymax=${SIZEY[k]}
        fi
        k=$((${k}+1))
    done
    
    xmin=2
    ymin=2
    xmax=$((${xmax}-1))
    ymax=$((${ymax}-1))
  fi

  statminsection="${xmin},${xmax},${ymin},${ymax}"
}


function p_ls {
  ls -l | grep ^- | ${P_GAWK} '{print $NF}'
}

# the following extracts keywords;
# leading and trailing whitespace is removed (2nd call to gawk)
# and blanks inside the keyword value are replaced with underscores (e.g. for OBJECT keyword)
function get_key {
  ${P_DFITS} $1 | ${P_FITSORT} -d "$2" | ${P_GAWK} 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}' | ${P_GAWK} '{$1=$1}1' | sed 's/ /_/g'
}

function get_keyext {
  ${P_DFITS} -x 1 $1 | ${P_FITSORT} -d "$2" | ${P_GAWK} '{if ($2!="KEY_N/A") print $2}'
}

function get_region {
  # merge global and local region files if they exist
  regionfile=""
  region=""

  test -f ${TEMPDIR}/regionfile_${CHIP}.reg && rm ${TEMPDIR}/regionfile_${CHIP}.reg 

  if [ -f ${INSTDIR}/${INSTRUMENT}.reg ]; then
  	cat ${INSTDIR}/${INSTRUMENT}.reg >> \
  	    ${TEMPDIR}/regionfile_${CHIP}.reg
  	regionfile="${TEMPDIR}/regionfile_${CHIP}.reg"
	region="-d ${regionfile}"
  fi
  if [ -f ${INSTDIR}/${INSTRUMENT}_${CHIP}.reg ]; then
  	cat ${INSTDIR}/${INSTRUMENT}_${CHIP}.reg >> \
  	    ${TEMPDIR}/regionfile_${CHIP}.reg
  	regionfile="${TEMPDIR}/regionfile_${CHIP}.reg"
	region="-d ${regionfile}"
  fi
}

function get_region_chip {
  # merge global and local region files if they exist
  # for a different chip than the currently processed one 
  # (constant sky subtraction)
  regionfile=""
  region=""

  test -f ${TEMPDIR}/regionfile_$1.reg_$$ && rm ${TEMPDIR}/regionfile_$1.reg_$$

  if [ -f ${INSTDIR}/${INSTRUMENT}.reg ]; then
  	cat ${INSTDIR}/${INSTRUMENT}.reg >> \
  	    ${TEMPDIR}/regionfile_$1.reg_$$
  	regionfile="${TEMPDIR}/regionfile_$1.reg_$$"
	region="-d ${regionfile}"
  fi
  if [ -f ${INSTDIR}/${INSTRUMENT}_$1.reg ]; then
  	cat ${INSTDIR}/${INSTRUMENT}_$1.reg >> \
  	    ${TEMPDIR}/regionfile_$1.reg_$$
  	regionfile="${TEMPDIR}/regionfile_$1.reg_$$"
	region="-d ${regionfile}"
  fi
}

function prepare_sex_for_region {
  backstring=""
  weightstring=""
  if [ -f ${regionfile} ] && [ "${regionfile}_A" != "_A" ]; then
      # estimate the background, ignoring blanked pixels
      background=`${P_FITSSTAT} -i ${FILE} -m median -q`
      backstring="-BACK_TYPE MANUAL -BACK_VALUE ${background}"
      weightstring="-WEIGHT_TYPE MAP_WEIGHT -WEIGHT_IMAGE /$1/WEIGHTS/globalweight_dummy_${CHIP}.fits"

      # check if the dummy weight exists
      if [ ! -e /$1/WEIGHTS/globalweight_dummy_${CHIP}.fits ]; then
	  mkdir -p /$1/WEIGHTS/
	  ${P_IC} -p -32 -c ${SIZEX[${CHIP}]} ${SIZEY[${CHIP}]} '1' > ${TEMPDIR}/dummy_${CHIP}.fits
	  ${P_FITSPOLYGON} -i ${TEMPDIR}/dummy_${CHIP}.fits -p ${regionfile} \
	      -o /$1/WEIGHTS/globalweight_dummy_${CHIP}.fits
	  rm ${TEMPDIR}/dummy_${CHIP}.fits
      fi
  fi
}


function prepare_imred_for_backgroundmodel {
  # The relevant settings depending on the apply mode of the background model
  flatstring=""
  fringestring=""

  ####################################################
  # subtract background model
  ####################################################
  if [ "${V_BACK_APPLYMODE}" -eq 0 ]; then
      fringestring="-FLAT N -FRINGE Y -FRINGE_SCALE ${V_BACK_FRINGESCALE}"
      if [ "${V_BACK_ILLUMSMOOTH}"_A != "_A" ]; then
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}_illum.fits
      else
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}.fits
      fi
      fringestring="${fringestring} -FRINGE_IMAGE ${FRINGEIMAGE} -FRINGE_REFIMAGE ${FRINGEIMAGE}"
  fi

  ####################################################
  # divide background model
  ####################################################
  if [ "${V_BACK_APPLYMODE}" -eq 1 ]; then
      flatstring="-FRINGE N -FLAT Y -FLAT_THRESHHOLD 0.1 -FLAT_SCALE ${V_BACK_ADJUSTGAINS}"
      if [ "${V_BACK_ILLUMSMOOTH}"_A != "_A" ]; then
	  FLATIMAGE=/$1/$2/$2_${CHIP}_illum.fits
      else
	  FLATIMAGE=/$1/$2/$2_${CHIP}.fits
      fi
      flatstring="${flatstring} -FLAT_IMAGE ${FLATIMAGE} -FLAT_SCALEIMAGE ${FLATIMAGE}"
  fi

  ####################################################
  # subtract fringing model
  ####################################################
  if [ "${V_BACK_APPLYMODE}" -eq 2 ]; then
      fringestring="-FRINGE Y -FRINGE_SCALE ${V_BACK_FRINGESCALE}"
      if [ "${V_BACK_FRINGESMOOTH}"_A != "_A" ]; then
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}_fringe_smooth.fits
      else
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}_fringe.fits
      fi
      fringestring="${fringestring} -FRINGE_IMAGE ${FRINGEIMAGE} -FRINGE_REFIMAGE /$1/$2/$2_${CHIP}_illum.fits"
  fi

  ####################################################
  # divide background model, subtract fringing model
  ####################################################
  if [ "${V_BACK_APPLYMODE}" -eq 3 ]; then
      flatstring="-FLAT Y -FLAT_THRESHHOLD 0.1 -FLAT_SCALE ${V_BACK_ADJUSTGAINS}"
      if [ "${V_BACK_ILLUMSMOOTH}"_A != "_A" ]; then
	  FLATIMAGE=/$1/$2/$2_${CHIP}_illum.fits
      else
	  FLATIMAGE=/$1/$2/$2_${CHIP}.fits
      fi
      flatstring="${flatstring} -FLAT_IMAGE ${FLATIMAGE} -FLAT_SCALEIMAGE ${FLATIMAGE}"

      fringestring="-FRINGE Y -FRINGE_SCALE ${V_BACK_FRINGESCALE}"
      if [ "${V_BACK_FRINGESMOOTH}"_A != "_A" ]; then
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}_fringe_smooth.fits
      else
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}_fringe.fits
      fi
      fringestring="${fringestring} -FRINGE_IMAGE ${FRINGEIMAGE} -FRINGE_REFIMAGE /$1/$2/$2_${CHIP}_illum.fits"
  fi

}

# setting up the (sorted) list of flats
rm ${TEMPDIR}/flatlist_$$
+ rm /home/albireo/.theli/tmp//flatlist_17200
rm: cannot remove '/home/albireo/.theli/tmp//flatlist_17200': No such file or directory
k=1
+ k=1
while [ "${k}" -le "${NCHIPS}" ]
do
    echo /$1/$2/$2_${k}.fits >> ${TEMPDIR}/flatlist_$$
    k=$((${k}+1))
done
+ '[' 1 -le 1 ']'
+ echo //home/albireo/14-17.02.2015/rgb//flat/flat_1.fits
+ k=2
+ '[' 2 -le 1 ']'

get_statminsection
+ get_statminsection
+ local xmin
+ local ymin
+ local xmax
+ local ymax
+ '[' _A '!=' _A ']'
+ k=1
+ statminsection=
+ xmax=3358
+ ymax=2536
+ '[' 1 -le 1 ']'
+ '[' 3358 -lt 3358 ']'
+ '[' 2536 -lt 2536 ']'
+ k=2
+ '[' 2 -le 1 ']'
+ xmin=2
+ ymin=2
+ xmax=3357
+ ymax=2535
+ statminsection=2,3357,2,2535
statminsection=`echo ${statminsection} | sed 's/,/ /g'`
echo ${statminsection} | sed 's/,/ /g'
++ echo 2,3357,2,2535
++ sed 's/,/ /g'
+ statminsection='2 3357 2 2535'

# get the statistics of all flats
${P_IMSTATS} \
    -i ${TEMPDIR}/flatlist_$$ \
    -s ${statminsection} \
    -t -1e8 1e8 \
    -o ${TEMPDIR}/flatlist_imstats0_$$
+ /home/albireo/THELI/theli//bin/Linux_64//imstats -i /home/albireo/.theli/tmp//flatlist_17200 -s 2 3357 2 2535 -t -1e8 1e8 -o /home/albireo/.theli/tmp//flatlist_imstats0_17200

# extract the mode
${P_GAWK} '($1 !~ /#/) {print $2}' ${TEMPDIR}/flatlist_imstats0_$$ > \
    ${TEMPDIR}/flatlist_imstats1_$$
+ /usr/bin/gawk '($1 !~ /#/) {print $2}' /home/albireo/.theli/tmp//flatlist_imstats0_17200

# extract the maximum
maxlevel=`${P_GETSTATS} -i ${TEMPDIR}/flatlist_imstats1_$$ -m max`
${P_GETSTATS} -i ${TEMPDIR}/flatlist_imstats1_$$ -m max
++ /home/albireo/THELI/theli//bin/Linux_64//getstats -i /home/albireo/.theli/tmp//flatlist_imstats1_17200 -m max
./create_flat_ratio.sh: line 45: /home/albireo/THELI/theli//bin/Linux_64//getstats: No such file or directory
+ maxlevel=

# normalise the fluxes with respect to the highest flux
${P_GAWK} '{printf "%.4f\n", $1/'"${maxlevel}"'}' ${TEMPDIR}/flatlist_imstats1_$$ > $1/$2//flatratios.dat
+ /usr/bin/gawk '{printf "%.4f\n", $1/}' /home/albireo/.theli/tmp//flatlist_imstats1_17200
gawk: cmd. line:1: {printf "%.4f\n", $1/}
gawk: cmd. line:1:                      ^ syntax error

echo ${maxlevel} > $1/$2/.maxlevel.dat
+ echo
#!/bin/bash -xv

# the script creates normalised images.
# It puts the result into new directories ..._norm.
# The script assumes a threshold. Pixels under
# this threshhold will be assigned a value of threshold
# in the resulting images.
#
# 30.05.04:
# temporary files go to a TEMPDIR directory 
#
# 12.04.2005:
# - I rewrote the script so that it works with the
#   'imstats' program instead with the FLIPS based
#   'immode'.

# $1: main directory
# $2: directory from which normaliced images should be created 
# $3: chips to be processed

INSTDIR=instruments_professional
+ INSTDIR=instruments_professional
if [ ! -f ${INSTDIR}/${INSTRUMENT}.ini ]; then
    INSTDIR=instruments_commercial
fi
+ '[' '!' -f instruments_professional/Moravian10z.ini ']'
+ INSTDIR=instruments_commercial
if [ ! -f ${INSTDIR}/${INSTRUMENT}.ini ]; then
    INSTDIR=~/.theli/instruments_user/
fi
+ '[' '!' -f instruments_commercial/Moravian10z.ini ']'
+ INSTDIR=/home/albireo/.theli/instruments_user/
. ${INSTDIR}/${INSTRUMENT:?}.ini
+ . /home/albireo/.theli/instruments_user//Moravian10z.ini
# **************************************************************
#            Instrument config file created by THELI
# **************************************************************

# Name of the instrument (must be unique!)
INSTRUMENT=Moravian10z
++ INSTRUMENT=Moravian10z

# Number of chips
NCHIPS=1
++ NCHIPS=1

# We need to export these
export INSTRUMENT
++ export INSTRUMENT
export NCHIPS
++ export NCHIPS

# Load directories for programs
. progs.ini
++ . progs.ini
# If we include this script in bash verbose and trace mode we do not want
# all the (verbose) output from this script:
USE_X=0
+++ USE_X=0
if  [[ ${-/x} != $- ]] ; then
  USE_X=1
  set +xv
fi
+++ [[ hvB != hvxB ]]
+++ USE_X=1
+++ set +xv
#
# this is needed for the GUI
#
P_PIPELIBS=/home/albireo/THELI/PipeLibs//pipe.csh
+++ P_PIPELIBS=/home/albireo/THELI/PipeLibs//pipe.csh
P_GETPMMOBJECTS=${BIN}/get_pmm_objects
+++ P_GETPMMOBJECTS=/home/albireo/THELI/theli//bin/Linux_64//get_pmm_objects
P_LDACDESC=${BIN}/ldacdesc
+++ P_LDACDESC=/home/albireo/THELI/theli//bin/Linux_64//ldacdesc
P_LDACDELTAB=${BIN}/ldacdeltab
+++ P_LDACDELTAB=/home/albireo/THELI/theli//bin/Linux_64//ldacdeltab
P_LDACDELKEY=${BIN}/ldacdelkey
+++ P_LDACDELKEY=/home/albireo/THELI/theli//bin/Linux_64//ldacdelkey
P_LDACPUTXY=${BIN}/ldacputxy
+++ P_LDACPUTXY=/home/albireo/THELI/theli//bin/Linux_64//ldacputxy
P_FITSFLIP=${BIN}/fitsflip
+++ P_FITSFLIP=/home/albireo/THELI/theli//bin/Linux_64//fitsflip
P_DEBLOOM=${BIN}/debloom
+++ P_DEBLOOM=/home/albireo/THELI/theli//bin/Linux_64//debloom
P_EQUALISEBAYERFLAT=${BIN}/equalisebayerflat
+++ P_EQUALISEBAYERFLAT=/home/albireo/THELI/theli//bin/Linux_64//equalisebayerflat
P_FITSCOLLAPSE=${BIN}/fitscollapse
+++ P_FITSCOLLAPSE=/home/albireo/THELI/theli//bin/Linux_64//fitscollapse
P_FITSWRAP=${BIN}/fitswrap
+++ P_FITSWRAP=/home/albireo/THELI/theli//bin/Linux_64//fitswrap
P_FITSCUBESLICE=${BIN}/fitscubeslice
+++ P_FITSCUBESLICE=/home/albireo/THELI/theli//bin/Linux_64//fitscubeslice
P_FITSADDKEY=${BIN}/fitsaddkey
+++ P_FITSADDKEY=/home/albireo/THELI/theli//bin/Linux_64//fitsaddkey
P_FITSCUT=${BIN}/fitscut
+++ P_FITSCUT=/home/albireo/THELI/theli//bin/Linux_64//fitscut
P_FITSBIN=${BIN}/fitsbin
+++ P_FITSBIN=/home/albireo/THELI/theli//bin/Linux_64//fitsbin
P_FITSBLOOMDETECT=${BIN}/fitsbloomdetect
+++ P_FITSBLOOMDETECT=/home/albireo/THELI/theli//bin/Linux_64//fitsbloomdetect
P_FITSFILL=${BIN}/fitsfill
+++ P_FITSFILL=/home/albireo/THELI/theli//bin/Linux_64//fitsfill
P_FITSGRAD=${BIN}/fitsgrad
+++ P_FITSGRAD=/home/albireo/THELI/theli//bin/Linux_64//fitsgrad
P_FITSDEMOSAICBAYER=${BIN}/fitsdemosaicbayer
+++ P_FITSDEMOSAICBAYER=/home/albireo/THELI/theli//bin/Linux_64//fitsdemosaicbayer
P_FITS3MAX=${BIN}/fits3max
+++ P_FITS3MAX=/home/albireo/THELI/theli//bin/Linux_64//fits3max
P_FITSGAUSS=${BIN}/fitsgauss
+++ P_FITSGAUSS=/home/albireo/THELI/theli//bin/Linux_64//fitsgauss
P_FITS2TIFF=${BIN}/fits2tiff
+++ P_FITS2TIFF=/home/albireo/THELI/theli//bin/Linux_64//fits2tiff
P_TIFF2FITS=${BIN}/tiff2fits
+++ P_TIFF2FITS=/home/albireo/THELI/theli//bin/Linux_64//tiff2fits
P_CORRLIRIS=${BIN}/corrliris
+++ P_CORRLIRIS=/home/albireo/THELI/theli//bin/Linux_64//corrliris
P_CROSSTALK=${BIN}/crosstalk
+++ P_CROSSTALK=/home/albireo/THELI/theli//bin/Linux_64//crosstalk
P_FINDGSC=${BIN}/findgsc
+++ P_FINDGSC=/home/albireo/THELI/theli//bin/Linux_64//findgsc
P_FINDUSNOB1=${BIN}/findusnob1
+++ P_FINDUSNOB1=/home/albireo/THELI/theli//bin/Linux_64//findusnob1
P_FIND2MASS=${BIN}/find2mass
+++ P_FIND2MASS=/home/albireo/THELI/theli//bin/Linux_64//find2mass
P_FINDSDSS7=${BIN}/findsdss7
+++ P_FINDSDSS7=/home/albireo/THELI/theli//bin/Linux_64//findsdss7
P_FINDUCAC3=${BIN}/finducac3
+++ P_FINDUCAC3=/home/albireo/THELI/theli//bin/Linux_64//finducac3
P_FINDNOMAD1=${BIN}/findnomad1
+++ P_FINDNOMAD1=/home/albireo/THELI/theli//bin/Linux_64//findnomad1
P_VIZQUERY=${BIN}/vizquery
+++ P_VIZQUERY=/home/albireo/THELI/theli//bin/Linux_64//vizquery
P_SESAME=${BIN}/sesame
+++ P_SESAME=/home/albireo/THELI/theli//bin/Linux_64//sesame
P_ACLIENT=${BIN}/aclient
+++ P_ACLIENT=/home/albireo/THELI/theli//bin/Linux_64//aclient
P_SCAMP=${BIN}/scamp
+++ P_SCAMP=/home/albireo/THELI/theli//bin/Linux_64//scamp
P_RENAME=${BIN}/rename
+++ P_RENAME=/home/albireo/THELI/theli//bin/Linux_64//rename
P_MISSFITS=${BIN}/missfits
+++ P_MISSFITS=/home/albireo/THELI/theli//bin/Linux_64//missfits
P_SWARPFILTER=${BIN}/swarpfilter
+++ P_SWARPFILTER=/home/albireo/THELI/theli//bin/Linux_64//swarpfilter
P_FITSBLOCKEDIT=${BIN}/fitsblockedit
+++ P_FITSBLOCKEDIT=/home/albireo/THELI/theli//bin/Linux_64//fitsblockedit
P_FITSMASK=${BIN}/fitsmask
+++ P_FITSMASK=/home/albireo/THELI/theli//bin/Linux_64//fitsmask
P_FITSMEDIAN=${BIN}/fitsmedian
+++ P_FITSMEDIAN=/home/albireo/THELI/theli//bin/Linux_64//fitsmedian
P_FITSNANMASK=${BIN}/fitsnanmask
+++ P_FITSNANMASK=/home/albireo/THELI/theli//bin/Linux_64//fitsnanmask
P_FITSSTAT=${BIN}/fitsstat
+++ P_FITSSTAT=/home/albireo/THELI/theli//bin/Linux_64//fitsstat
P_FITSSPLITBAYER=${BIN}/fitssplitbayer
+++ P_FITSSPLITBAYER=/home/albireo/THELI/theli//bin/Linux_64//fitssplitbayer
P_FITSGUESSGEOM=${BIN}/fitsguessgeom
+++ P_FITSGUESSGEOM=/home/albireo/THELI/theli//bin/Linux_64//fitsguessgeom
P_SPLITSUPRIMECAM=${BIN}/splitsuprimecam
+++ P_SPLITSUPRIMECAM=/home/albireo/THELI/theli//bin/Linux_64//splitsuprimecam
P_PASTEDUALCHANNEL=${BIN}/paste_dualchannel
+++ P_PASTEDUALCHANNEL=/home/albireo/THELI/theli//bin/Linux_64//paste_dualchannel
P_PASTEQUADCHANNEL=${BIN}/paste_quadchannel
+++ P_PASTEQUADCHANNEL=/home/albireo/THELI/theli//bin/Linux_64//paste_quadchannel
P_SPLITGMOSMULTIPORT=${BIN}/split_gmos_multiport
+++ P_SPLITGMOSMULTIPORT=/home/albireo/THELI/theli//bin/Linux_64//split_gmos_multiport
P_SPLITGROND=${BIN}/split_grond
+++ P_SPLITGROND=/home/albireo/THELI/theli//bin/Linux_64//split_grond
P_GETSHIFT=${BIN}/get_shift
+++ P_GETSHIFT=/home/albireo/THELI/theli//bin/Linux_64//get_shift
P_FITSNONLINEARITY=${BIN}/fitsnonlinearity
+++ P_FITSNONLINEARITY=/home/albireo/THELI/theli//bin/Linux_64//fitsnonlinearity
P_FITSPIC=${BIN}/fitspic
+++ P_FITSPIC=/home/albireo/THELI/theli//bin/Linux_64//fitspic
P_FITSPOLYGON=${BIN}/fitspolygon
+++ P_FITSPOLYGON=/home/albireo/THELI/theli//bin/Linux_64//fitspolygon
P_EXPANDSEXMASK=${BIN}/expand_sexmask
+++ P_EXPANDSEXMASK=/home/albireo/THELI/theli//bin/Linux_64//expand_sexmask
P_DCRAW=${BIN}/dcraw
+++ P_DCRAW=/home/albireo/THELI/theli//bin/Linux_64//dcraw
P_DECSEXCONV=${BIN}/decsexconv
+++ P_DECSEXCONV=/home/albireo/THELI/theli//bin/Linux_64//decsexconv
P_STIFF=${BIN}/stiff
+++ P_STIFF=/home/albireo/THELI/theli//bin/Linux_64//stiff
P_SUBSKY=${BIN}/subsky
+++ P_SUBSKY=/home/albireo/THELI/theli//bin/Linux_64//subsky
P_GIFSICLE=${BIN}/gifsicle
+++ P_GIFSICLE=/home/albireo/THELI/theli//bin/Linux_64//gifsicle
P_XY2SKY=${BIN}/xy2sky
+++ P_XY2SKY=/home/albireo/THELI/theli//bin/Linux_64//xy2sky
P_SKY2XY=${BIN}/sky2xy
+++ P_SKY2XY=/home/albireo/THELI/theli//bin/Linux_64//sky2xy
P_ISFITS=${BIN}/isfits
+++ P_ISFITS=/home/albireo/THELI/theli//bin/Linux_64//isfits
P_GETKEY=${BIN}/getkey
+++ P_GETKEY=/home/albireo/THELI/theli//bin/Linux_64//getkey
P_SKY2XY_HELPER=${BIN}/sky2xy_helper
+++ P_SKY2XY_HELPER=/home/albireo/THELI/theli//bin/Linux_64//sky2xy_helper
P_GET_ROTIMSIZE=${BIN}/get_rotimsize
+++ P_GET_ROTIMSIZE=/home/albireo/THELI/theli//bin/Linux_64//get_rotimsize
P_CLEANSTRING=${BIN}/cleanstring
+++ P_CLEANSTRING=/home/albireo/THELI/theli//bin/Linux_64//cleanstring
P_NUMCPU=${BIN}/numcpu
+++ P_NUMCPU=/home/albireo/THELI/theli//bin/Linux_64//numcpu
P_GETSTATS=${BIN}/getstats
+++ P_GETSTATS=/home/albireo/THELI/theli//bin/Linux_64//getstats
P_CDELT2CD=${BIN}/cdelt2cd
+++ P_CDELT2CD=/home/albireo/THELI/theli//bin/Linux_64//cdelt2cd
P_GETCDMATRIX=${BIN}/get_cdmatrix
+++ P_GETCDMATRIX=/home/albireo/THELI/theli//bin/Linux_64//get_cdmatrix
P_GETPIXSCALE=${BIN}/get_pixscale
+++ P_GETPIXSCALE=/home/albireo/THELI/theli//bin/Linux_64//get_pixscale
P_GETPOSANGLE=${BIN}/get_posangle
+++ P_GETPOSANGLE=/home/albireo/THELI/theli//bin/Linux_64//get_posangle
P_GETREFCATRADIUS=${BIN}/get_refcat_radius
+++ P_GETREFCATRADIUS=/home/albireo/THELI/theli//bin/Linux_64//get_refcat_radius
P_MERGEDAT=${BIN}/mergedat
+++ P_MERGEDAT=/home/albireo/THELI/theli//bin/Linux_64//mergedat
P_ROTATECDMATRIX=${BIN}/rotate_cdmatrix
+++ P_ROTATECDMATRIX=/home/albireo/THELI/theli//bin/Linux_64//rotate_cdmatrix
P_BACKGROUNDDYNAMIC=${BIN}/background_dynamic
+++ P_BACKGROUNDDYNAMIC=/home/albireo/THELI/theli//bin/Linux_64//background_dynamic
P_BACKGROUNDSTATIC=${BIN}/background_static
+++ P_BACKGROUNDSTATIC=/home/albireo/THELI/theli//bin/Linux_64//background_static
P_MJD=${BIN}/mjd
+++ P_MJD=/home/albireo/THELI/theli//bin/Linux_64//mjd
P_LST=${BIN}/lst
+++ P_LST=/home/albireo/THELI/theli//bin/Linux_64//lst
P_IMALYZER=${BIN}/imalyzer
+++ P_IMALYZER=/home/albireo/THELI/theli//bin/Linux_64//imalyzer
P_E2ELL=${BIN}/e2ell
+++ P_E2ELL=/home/albireo/THELI/theli//bin/Linux_64//e2ell
P_FITSSMOOTHEDGE=${BIN}/fitssmoothedge
+++ P_FITSSMOOTHEDGE=/home/albireo/THELI/theli//bin/Linux_64//fitssmoothedge
P_FITSEXTRACTEXT=${BIN}/fitsextractext
+++ P_FITSEXTRACTEXT=/home/albireo/THELI/theli//bin/Linux_64//fitsextractext
P_ERRTEST=${BIN}/errtest
+++ P_ERRTEST=/home/albireo/THELI/theli//bin/Linux_64//errtest
P_BUILDINDEX=${BIN_ANET}/build-astrometry-index
+++ P_BUILDINDEX=/home/albireo/THELI/theli//gui/packages/astrometry/build/bin//build-astrometry-index
P_SOLVEFIELD=${BIN_ANET}/solve-field
+++ P_SOLVEFIELD=/home/albireo/THELI/theli//gui/packages/astrometry/build/bin//solve-field
P_XCORR=${BIN}/xcorr
+++ P_XCORR=/home/albireo/THELI/theli//bin/Linux_64//xcorr
#
# load the parameter files
#
. ~/.theli/param_set1.ini
+++ . /home/albireo/.theli/param_set1.ini
PROJECTNAME=Pferdekopf
++++ PROJECTNAME=Pferdekopf
NPARA=1
++++ NPARA=1
GUIVERSION=2.9.5
++++ GUIVERSION=2.9.5
KERNEL=Linux
++++ KERNEL=Linux
NFRAMES=47
++++ NFRAMES=47
V_PRE_SPLITMIRCUBE=N
++++ V_PRE_SPLITMIRCUBE=N
V_DO_BIAS=N
++++ V_DO_BIAS=N
V_DO_FLAT=Y
++++ V_DO_FLAT=Y
V_NONLINCORR=N
++++ V_NONLINCORR=N
V_AP_SERVER=vizier.u-strasbg.fr
++++ V_AP_SERVER=vizier.u-strasbg.fr
V_AP_MAGLIM=20
++++ V_AP_MAGLIM=20
V_AP_RADIUS=30
++++ V_AP_RADIUS=30
V_AP_REFRA=header
++++ V_AP_REFRA=header
V_AP_REFDEC=header
++++ V_AP_REFDEC=header
. ~/.theli/param_set2.ini
+++ . /home/albireo/.theli/param_set2.ini
V_PRE_RENAME_CHECKED=0
++++ V_PRE_RENAME_CHECKED=0
V_RENAME_FITSKEY=ARCFILE
++++ V_RENAME_FITSKEY=ARCFILE
V_SORT_FITSKEY=OBJECT
++++ V_SORT_FITSKEY=OBJECT
V_SORT_BIAS=
++++ V_SORT_BIAS=
V_SORT_DARK=
++++ V_SORT_DARK=
V_SORT_DOMEFLAT=
++++ V_SORT_DOMEFLAT=
V_SORT_SKYFLAT=
++++ V_SORT_SKYFLAT=
V_SORT_STD=
++++ V_SORT_STD=
V_PRE_XTALK_NOR_CHECKED=0
++++ V_PRE_XTALK_NOR_CHECKED=0
V_PRE_XTALK_ROW_CHECKED=0
++++ V_PRE_XTALK_ROW_CHECKED=0
V_PRE_XTALK_MULTI_CHECKED=0
++++ V_PRE_XTALK_MULTI_CHECKED=0
V_PRE_XTALK_NOR_AMPLITUDE=
++++ V_PRE_XTALK_NOR_AMPLITUDE=
V_PRE_XTALK_ROW_AMPLITUDE=
++++ V_PRE_XTALK_ROW_AMPLITUDE=
V_PRE_XTALK_NOR_BUTTONID=-1
++++ V_PRE_XTALK_NOR_BUTTONID=-1
V_PRE_XTALK_ROW_BUTTONID=-1
++++ V_PRE_XTALK_ROW_BUTTONID=-1
V_PRE_XTALK_MULTI_BUTTONID=-1
++++ V_PRE_XTALK_MULTI_BUTTONID=-1
V_PRE_XTALK_MULTI_NSECTION=
++++ V_PRE_XTALK_MULTI_NSECTION=
V_CAL_OVSCANNLOW=0
++++ V_CAL_OVSCANNLOW=0
V_CAL_OVSCANNHIGH=1
++++ V_CAL_OVSCANNHIGH=1
V_CAL_BIASNLOW=0
++++ V_CAL_BIASNLOW=0
V_CAL_BIASNHIGH=1
++++ V_CAL_BIASNHIGH=1
V_CAL_DARKNLOW=0
++++ V_CAL_DARKNLOW=0
V_CAL_DARKNHIGH=1
++++ V_CAL_DARKNHIGH=1
V_CAL_FLATNLOW=0
++++ V_CAL_FLATNLOW=0
V_CAL_FLATNHIGH=1
++++ V_CAL_FLATNHIGH=1
V_CAL_USEDARK=FALSE
++++ V_CAL_USEDARK=FALSE
V_BACK_NLOW=0
++++ V_BACK_NLOW=0
V_BACK_NHIGH=1
++++ V_BACK_NHIGH=1
V_BACK_DETECTTHRESH=1.3
++++ V_BACK_DETECTTHRESH=1.3
V_BACK_DETECTMINAREA=5
++++ V_BACK_DETECTMINAREA=5
V_BACK_MASKEXPAND=
++++ V_BACK_MASKEXPAND=
V_BACK_ILLUMSMOOTH=
++++ V_BACK_ILLUMSMOOTH=
V_BACK_FRINGESMOOTH=
++++ V_BACK_FRINGESMOOTH=
V_BACK_WINDOWSIZE=0
++++ V_BACK_WINDOWSIZE=0
V_BACK_GAPSIZE=1.0
++++ V_BACK_GAPSIZE=1.0
V_BACK_APPLYMODE=0
++++ V_BACK_APPLYMODE=0
V_BACK_COMBINEMETHOD=0
++++ V_BACK_COMBINEMETHOD=0
V_BACK_SEXFILTER=Y
++++ V_BACK_SEXFILTER=Y
V_BACK_ADJUSTGAINS=N
++++ V_BACK_ADJUSTGAINS=N
V_BACK_FRINGESCALE=Y
++++ V_BACK_FRINGESCALE=Y
V_BACK_SKY2PASS=Y
++++ V_BACK_SKY2PASS=Y
V_COLLDETECTTHRESH=
++++ V_COLLDETECTTHRESH=
V_COLLDETECTMINAREA=
++++ V_COLLDETECTMINAREA=
V_COLLMASKEXPAND=
++++ V_COLLMASKEXPAND=
V_COLLREJECTTHRESH=1.5
++++ V_COLLREJECTTHRESH=1.5
V_COLLDIRECTION=x
++++ V_COLLDIRECTION=x
V_COLLXMIN=
++++ V_COLLXMIN=
V_COLLXMAX=
++++ V_COLLXMAX=
V_COLLYMIN=
++++ V_COLLYMIN=
V_COLLYMAX=
++++ V_COLLYMAX=
V_COLLMASKACTION=1
++++ V_COLLMASKACTION=1
V_COLLAUTOTHRESHOLD=0
++++ V_COLLAUTOTHRESHOLD=0
V_WEIGHTBINMIN=-100
++++ V_WEIGHTBINMIN=-100
V_WEIGHTBINMAX=500
++++ V_WEIGHTBINMAX=500
V_WEIGHTBINSIZE=4
++++ V_WEIGHTBINSIZE=4
V_WEIGHTLOWTHRESHOLD=
++++ V_WEIGHTLOWTHRESHOLD=
V_WEIGHTHIGHTHRESHOLD=
++++ V_WEIGHTHIGHTHRESHOLD=
V_GLOBWFLATMIN=0.5
++++ V_GLOBWFLATMIN=0.5
V_GLOBWFLATMAX=1.6
++++ V_GLOBWFLATMAX=1.6
V_GLOBWDARKMIN=
++++ V_GLOBWDARKMIN=
V_GLOBWDARKMAX=
++++ V_GLOBWDARKMAX=
V_GLOBWDARKDIR=
++++ V_GLOBWDARKDIR=
V_COSMICSTHRESHOLD=0.1
++++ V_COSMICSTHRESHOLD=0.1
V_COSMICDT=6
++++ V_COSMICDT=6
V_COSMICDMIN=1
++++ V_COSMICDMIN=1
V_DEFECT_KERNELSIZE=
++++ V_DEFECT_KERNELSIZE=
V_DEFECT_ROWTOL=
++++ V_DEFECT_ROWTOL=
V_DEFECT_COLTOL=
++++ V_DEFECT_COLTOL=
V_DEFECT_CLUSTOL=
++++ V_DEFECT_CLUSTOL=
V_DEFECT_KERNELSIZE_SF=
++++ V_DEFECT_KERNELSIZE_SF=
V_DEFECT_ROWTOL_SF=
++++ V_DEFECT_ROWTOL_SF=
V_DEFECT_COLTOL_SF=
++++ V_DEFECT_COLTOL_SF=
V_DEFECT_CLUSTOL_SF=
++++ V_DEFECT_CLUSTOL_SF=
V_BLOOMLOWLIMIT=20000
++++ V_BLOOMLOWLIMIT=20000
V_BLOOMMINAREA=100
++++ V_BLOOMMINAREA=100
V_BLOOMWIDTH=0
++++ V_BLOOMWIDTH=0
V_WEIGHT_BINOUTLIER=FALSE
++++ V_WEIGHT_BINOUTLIER=FALSE
V_GLOBW_UNIFORMWEIGHT=FALSE
++++ V_GLOBW_UNIFORMWEIGHT=FALSE
V_MASKBLOOMSPIKE=0
++++ V_MASKBLOOMSPIKE=0
V_AP_DETECTTHRESH=5.0
++++ V_AP_DETECTTHRESH=5.0
V_AP_DETECTMINAREA=5
++++ V_AP_DETECTMINAREA=5
V_DEBLENDMINCONT=0.0005
++++ V_DEBLENDMINCONT=0.0005
V_AP_LOWNUM=1
++++ V_AP_LOWNUM=1
V_SEXCATMINFWHM=1.5
++++ V_SEXCATMINFWHM=1.5
V_SEXCATFLAG=0
++++ V_SEXCATFLAG=0
V_SATURATION=
++++ V_SATURATION=
V_SEXBACKLEVEL=
++++ V_SEXBACKLEVEL=
V_AP_FILTER=N
++++ V_AP_FILTER=N
V_SCAMP_MAXPOSANGLE=2.0
++++ V_SCAMP_MAXPOSANGLE=2.0
V_SCAMP_MAXOFFSET=2.0
++++ V_SCAMP_MAXOFFSET=2.0
V_SCAMP_MAXSCALE=1.05
++++ V_SCAMP_MAXSCALE=1.05
V_SCAMP_SNLOW=5
++++ V_SCAMP_SNLOW=5
V_SCAMP_SNHIGH=20
++++ V_SCAMP_SNHIGH=20
V_SCAMP_FGROUPRADIUS=1.0
++++ V_SCAMP_FGROUPRADIUS=1.0
V_SCAMP_CROSSIDRADIUS=0
++++ V_SCAMP_CROSSIDRADIUS=0
V_SCAMP_ASTREFWEIGHT=1.0
++++ V_SCAMP_ASTREFWEIGHT=1.0
V_SCAMP_ASTRINSTRUKEY=FILTER
++++ V_SCAMP_ASTRINSTRUKEY=FILTER
V_SCAMP_PHOTINSTRUKEY=FILTER
++++ V_SCAMP_PHOTINSTRUKEY=FILTER
V_SCAMP_POLYORDER=3
++++ V_SCAMP_POLYORDER=3
V_SCAMP_POLYORDER2=
++++ V_SCAMP_POLYORDER2=
V_SCAMP_DISTORTGROUPS=
++++ V_SCAMP_DISTORTGROUPS=
V_SCAMP_DISTORTKEYS=
++++ V_SCAMP_DISTORTKEYS=
V_SCAMP_STABILITY=INSTRUMENT
++++ V_SCAMP_STABILITY=INSTRUMENT
V_SCAMP_MOSAICTYPE=UNCHANGED
++++ V_SCAMP_MOSAICTYPE=UNCHANGED
V_SCAMP_FOCALPLANE=DEFAULT
++++ V_SCAMP_FOCALPLANE=DEFAULT
V_SCAMP_MATCHFLIPPED=N
++++ V_SCAMP_MATCHFLIPPED=N
V_SCAMP_MATCHWCS=Y
++++ V_SCAMP_MATCHWCS=Y
V_ANET_MAXSCALE=1.05
++++ V_ANET_MAXSCALE=1.05
V_ANET_POLYORDER=3
++++ V_ANET_POLYORDER=3
V_ANET_SCAMPDISTORT=N
++++ V_ANET_SCAMPDISTORT=N
V_ABSPHOT_FILTER=B
++++ V_ABSPHOT_FILTER=B
V_ABSPHOT_COLORFIXED=0.1
++++ V_ABSPHOT_COLORFIXED=0.1
V_ABSPHOT_EXTINCTION=0
++++ V_ABSPHOT_EXTINCTION=0
V_ABSPHOT_ZPMIN=24
++++ V_ABSPHOT_ZPMIN=24
V_ABSPHOT_ZPMAX=25
++++ V_ABSPHOT_ZPMAX=25
V_ABSPHOT_STDMINMAG=0.0
++++ V_ABSPHOT_STDMINMAG=0.0
V_ABSPHOT_MAXPHOTERR=0.05
++++ V_ABSPHOT_MAXPHOTERR=0.05
V_ABSPHOT_WCSERR=10
++++ V_ABSPHOT_WCSERR=10
V_ABSPHOT_WCSERRCHECKBOX=Y
++++ V_ABSPHOT_WCSERRCHECKBOX=Y
V_ABSPHOT_STDCAT_DIRECT=SDSS
++++ V_ABSPHOT_STDCAT_DIRECT=SDSS
V_ABSPHOT_STDFILTERM2=u
++++ V_ABSPHOT_STDFILTERM2=u
V_ABSPHOT_STDCAT_INDIRECT=LANDOLT_UBVRI
++++ V_ABSPHOT_STDCAT_INDIRECT=LANDOLT_UBVRI
V_ABSPHOT_STDFILTER=U
++++ V_ABSPHOT_STDFILTER=U
V_ABSPHOT_STDCOLOR=UmB
++++ V_ABSPHOT_STDCOLOR=UmB
V_ABSPHOT_CALMODE=RUNCALIB
++++ V_ABSPHOT_CALMODE=RUNCALIB
V_ABSPHOT_FITTINGMETHODM2=CHIP
++++ V_ABSPHOT_FITTINGMETHODM2=CHIP
V_COADD_REFRA=
++++ V_COADD_REFRA=
V_COADD_REFDEC=
++++ V_COADD_REFDEC=
V_COADD_IDENT=(null)
++++ V_COADD_IDENT=(null)
V_COADD_SEEING=
++++ V_COADD_SEEING=
V_COADD_RZP=
++++ V_COADD_RZP=
V_COADD_PIXSCALE=0.89
++++ V_COADD_PIXSCALE=0.89
V_COADD_SIZEX=
++++ V_COADD_SIZEX=
V_COADD_SIZEY=
++++ V_COADD_SIZEY=
V_COADD_SKYPOSANGLE=
++++ V_COADD_SKYPOSANGLE=
V_COADD_CHIPS=""
++++ V_COADD_CHIPS=
V_COADD_FILTERTHRESHOLD=
++++ V_COADD_FILTERTHRESHOLD=
V_COADD_FILTERCLUSTERSIZE=
++++ V_COADD_FILTERCLUSTERSIZE=
V_COADD_FILTERBORDERWIDTH=
++++ V_COADD_FILTERBORDERWIDTH=
V_COADD_SMOOTHEDGE=
++++ V_COADD_SMOOTHEDGE=
V_COADD_PROPMOTIONRA=
++++ V_COADD_PROPMOTIONRA=
V_COADD_PROPMOTIONDEC=
++++ V_COADD_PROPMOTIONDEC=
V_COADD_KERNEL=LANCZOS3
++++ V_COADD_KERNEL=LANCZOS3
V_COADD_FILTER=
++++ V_COADD_FILTER=
V_COADD_PROJECTION=TAN
++++ V_COADD_PROJECTION=TAN
V_COADD_CELESTIALTYPE=EQUATORIAL
++++ V_COADD_CELESTIALTYPE=EQUATORIAL
V_COADD_COMBINETYPE=WEIGHTED
++++ V_COADD_COMBINETYPE=WEIGHTED
. ~/.theli/param_set3.ini
+++ . /home/albireo/.theli/param_set3.ini

# Geographical latitude of the observatory
OBSLAT=
++ OBSLAT=

# Pixel scale in x and y [degrees] (CDELT1/2 keywords)
PIXSCX=-0
++ PIXSCX=-0
PIXSCY=0
++ PIXSCY=0

# Pixel scale in arcsec
PIXSCALE=
++ PIXSCALE=

# Detector gain
GAIN=1.0
++ GAIN=1.0

# Overscan regions. The values are the x-range.
# The min is given by OVSCANX1, the max by OVSCANX2.
# We need separate regions for each chip.

OVSCANX1=([1]=0)
++ OVSCANX1=([1]=0)
OVSCANX2=([1]=0)
++ OVSCANX2=([1]=0)

# Sections for the cutting. Select those pixels that receive light.
# Give min values for x and y, and the extent in x and y.

CUTX=([1]=1)
++ CUTX=([1]=1)
CUTY=([1]=1)
++ CUTY=([1]=1)
SIZEX=([1]=3358)
++ SIZEX=([1]=3358)
SIZEY=([1]=2536)
++ SIZEY=([1]=2536)

# Reference pixels for each chip.

REFPIXX=([1]=100)
++ REFPIXX=([1]=100)
REFPIXY=([1]=100)
++ REFPIXY=([1]=100)

# Camera type
TYPE=OPT
++ TYPE=OPT


# first calculate the modes:
test -e ${TEMPDIR}/immode.dat_$$ && rm ${TEMPDIR}/immode.dat_$$
+ test -e /home/albireo/.theli/tmp//immode.dat_17210

for CHIP in $3
do
  ${P_IMSTATS} -d 6 /$1/$2/$2_${CHIP}.fits -t -1e8 1e8 \
      >> ${TEMPDIR}/immode.dat_$$
done
+ for CHIP in '$3'
+ /home/albireo/THELI/theli//bin/Linux_64//imstats -d 6 //home/albireo/14-17.02.2015/rgb//flat/flat_1.fits -t -1e8 1e8

# clean the modes (in case of strong vignetting they might be underestimated)
# lower threshold: 25% of the initial mode estimate
${P_GAWK} '($1!="#") {print $2}' ${TEMPDIR}/immode.dat_$$  > \
    ${TEMPDIR}/immode_clean.dat_$$
+ /usr/bin/gawk '($1!="#") {print $2}' /home/albireo/.theli/tmp//immode.dat_17210

k=1
+ k=1
for CHIP in $3
do
    thresh=`${P_GAWK} '(NR=='"${k}"') {print 0.25*$1}' ${TEMPDIR}/immode_clean.dat_$$`
    ${P_IMSTATS} -d 6 /$1/$2/$2_${CHIP}.fits -t ${thresh} 1e8 \
	>> ${TEMPDIR}/immode_new.dat_$$
    k=$((${k}+1))
done
+ for CHIP in '$3'
${P_GAWK} '(NR=='"${k}"') {print 0.25*$1}' ${TEMPDIR}/immode_clean.dat_$$
++ /usr/bin/gawk '(NR==1) {print 0.25*$1}' /home/albireo/.theli/tmp//immode_clean.dat_17210
+ thresh=5642.9
+ /home/albireo/THELI/theli//bin/Linux_64//imstats -d 6 //home/albireo/14-17.02.2015/rgb//flat/flat_1.fits -t 5642.9 1e8
+ k=2

# create the new directory for the normalized images if
# it does not exist already

if [ ! -d "/$1/$2_norm" ]; then
  mkdir "/$1/$2_norm"
fi
+ '[' '!' -d //home/albireo/14-17.02.2015/rgb//flat_norm ']'
+ mkdir //home/albireo/14-17.02.2015/rgb//flat_norm

MODES=`${P_GAWK} '($1!="#") {printf ("%f ", $2)}' ${TEMPDIR}/immode_new.dat_$$`
${P_GAWK} '($1!="#") {printf ("%f ", $2)}' ${TEMPDIR}/immode_new.dat_$$
++ /usr/bin/gawk '($1!="#") {printf ("%f ", $2)}' /home/albireo/.theli/tmp//immode_new.dat_17210
+ MODES='22571.605469 '

# Set the threshold to 20% of the smallest mode value

THRESH=`${P_GAWK} '($1!="#") {print $2}' ${TEMPDIR}/immode_new.dat_$$ |\
        ${P_GAWK} 'BEGIN{min=1000000} {if ($1<min) min=$1} END {print 0.2*min}'`
${P_GAWK} '($1!="#") {print $2}' ${TEMPDIR}/immode_new.dat_$$ |        ${P_GAWK} 'BEGIN{min=1000000} {if ($1<min) min=$1} END {print 0.2*min}'
++ /usr/bin/gawk '($1!="#") {print $2}' /home/albireo/.theli/tmp//immode_new.dat_17210
++ /usr/bin/gawk 'BEGIN{min=1000000} {if ($1<min) min=$1} END {print 0.2*min}'
+ THRESH=4514.32

i=1
+ i=1
for CHIP in $3
do
  ACTUMODE=`echo ${MODES} | ${P_GAWK} '{print $'${i}'}'`

  if [ -L "/$1/$2/$2_${CHIP}.fits" ]; then
    LINK=`${P_READLINK} /$1/$2/$2_${CHIP}.fits`
    RESULTDIR=`dirname ${LINK}`
    ln -s ${RESULTDIR}/$2_norm_${CHIP}.fits /$1/$2_norm/$2_norm_${CHIP}.fits
  else
    RESULTDIR=$1/$2_norm/
  fi

  # if a pixel is below the threshold, then set it to zero
  ${P_IC} -p -32 '%1 '${ACTUMODE}' / 0.0 %1 '${THRESH}' > ?' /$1/$2/$2_${CHIP}.fits > \
          ${RESULTDIR}/$2_norm_${CHIP}.fits

  i=$(( $i + 1 ))
done
+ for CHIP in '$3'
echo ${MODES} | ${P_GAWK} '{print $'${i}'}'
++ echo 22571.605469
++ /usr/bin/gawk '{print $1}'
+ ACTUMODE=22571.605469
+ '[' -L //home/albireo/14-17.02.2015/rgb//flat/flat_1.fits ']'
+ RESULTDIR=/home/albireo/14-17.02.2015/rgb//flat_norm/
+ /home/albireo/THELI/theli//bin/Linux_64//ic -p -32 '%1 22571.605469 / 0.0 %1 4514.32 > ?' //home/albireo/14-17.02.2015/rgb//flat/flat_1.fits
+ i=2
#!/bin/bash -xv

#$1: main directory (filter)
#$2: Bias directory
#$3: Flat directory
#$4: Science directory
#$5: chips to be processed

# preliminary work:
INSTDIR=instruments_professional
+ INSTDIR=instruments_professional
if [ ! -f ${INSTDIR}/${INSTRUMENT}.ini ]; then
    INSTDIR=instruments_commercial
fi
+ '[' '!' -f instruments_professional/Moravian10z.ini ']'
+ INSTDIR=instruments_commercial
if [ ! -f ${INSTDIR}/${INSTRUMENT}.ini ]; then
    INSTDIR=~/.theli/instruments_user/
fi
+ '[' '!' -f instruments_commercial/Moravian10z.ini ']'
+ INSTDIR=/home/albireo/.theli/instruments_user/
. ${INSTDIR}/${INSTRUMENT:?}.ini
+ . /home/albireo/.theli/instruments_user//Moravian10z.ini
# **************************************************************
#            Instrument config file created by THELI
# **************************************************************

# Name of the instrument (must be unique!)
INSTRUMENT=Moravian10z
++ INSTRUMENT=Moravian10z

# Number of chips
NCHIPS=1
++ NCHIPS=1

# We need to export these
export INSTRUMENT
++ export INSTRUMENT
export NCHIPS
++ export NCHIPS

# Load directories for programs
. progs.ini
++ . progs.ini
# If we include this script in bash verbose and trace mode we do not want
# all the (verbose) output from this script:
USE_X=0
+++ USE_X=0
if  [[ ${-/x} != $- ]] ; then
  USE_X=1
  set +xv
fi
+++ [[ hvB != hvxB ]]
+++ USE_X=1
+++ set +xv
#
# this is needed for the GUI
#
P_PIPELIBS=/home/albireo/THELI/PipeLibs//pipe.csh
+++ P_PIPELIBS=/home/albireo/THELI/PipeLibs//pipe.csh
P_GETPMMOBJECTS=${BIN}/get_pmm_objects
+++ P_GETPMMOBJECTS=/home/albireo/THELI/theli//bin/Linux_64//get_pmm_objects
P_LDACDESC=${BIN}/ldacdesc
+++ P_LDACDESC=/home/albireo/THELI/theli//bin/Linux_64//ldacdesc
P_LDACDELTAB=${BIN}/ldacdeltab
+++ P_LDACDELTAB=/home/albireo/THELI/theli//bin/Linux_64//ldacdeltab
P_LDACDELKEY=${BIN}/ldacdelkey
+++ P_LDACDELKEY=/home/albireo/THELI/theli//bin/Linux_64//ldacdelkey
P_LDACPUTXY=${BIN}/ldacputxy
+++ P_LDACPUTXY=/home/albireo/THELI/theli//bin/Linux_64//ldacputxy
P_FITSFLIP=${BIN}/fitsflip
+++ P_FITSFLIP=/home/albireo/THELI/theli//bin/Linux_64//fitsflip
P_DEBLOOM=${BIN}/debloom
+++ P_DEBLOOM=/home/albireo/THELI/theli//bin/Linux_64//debloom
P_EQUALISEBAYERFLAT=${BIN}/equalisebayerflat
+++ P_EQUALISEBAYERFLAT=/home/albireo/THELI/theli//bin/Linux_64//equalisebayerflat
P_FITSCOLLAPSE=${BIN}/fitscollapse
+++ P_FITSCOLLAPSE=/home/albireo/THELI/theli//bin/Linux_64//fitscollapse
P_FITSWRAP=${BIN}/fitswrap
+++ P_FITSWRAP=/home/albireo/THELI/theli//bin/Linux_64//fitswrap
P_FITSCUBESLICE=${BIN}/fitscubeslice
+++ P_FITSCUBESLICE=/home/albireo/THELI/theli//bin/Linux_64//fitscubeslice
P_FITSADDKEY=${BIN}/fitsaddkey
+++ P_FITSADDKEY=/home/albireo/THELI/theli//bin/Linux_64//fitsaddkey
P_FITSCUT=${BIN}/fitscut
+++ P_FITSCUT=/home/albireo/THELI/theli//bin/Linux_64//fitscut
P_FITSBIN=${BIN}/fitsbin
+++ P_FITSBIN=/home/albireo/THELI/theli//bin/Linux_64//fitsbin
P_FITSBLOOMDETECT=${BIN}/fitsbloomdetect
+++ P_FITSBLOOMDETECT=/home/albireo/THELI/theli//bin/Linux_64//fitsbloomdetect
P_FITSFILL=${BIN}/fitsfill
+++ P_FITSFILL=/home/albireo/THELI/theli//bin/Linux_64//fitsfill
P_FITSGRAD=${BIN}/fitsgrad
+++ P_FITSGRAD=/home/albireo/THELI/theli//bin/Linux_64//fitsgrad
P_FITSDEMOSAICBAYER=${BIN}/fitsdemosaicbayer
+++ P_FITSDEMOSAICBAYER=/home/albireo/THELI/theli//bin/Linux_64//fitsdemosaicbayer
P_FITS3MAX=${BIN}/fits3max
+++ P_FITS3MAX=/home/albireo/THELI/theli//bin/Linux_64//fits3max
P_FITSGAUSS=${BIN}/fitsgauss
+++ P_FITSGAUSS=/home/albireo/THELI/theli//bin/Linux_64//fitsgauss
P_FITS2TIFF=${BIN}/fits2tiff
+++ P_FITS2TIFF=/home/albireo/THELI/theli//bin/Linux_64//fits2tiff
P_TIFF2FITS=${BIN}/tiff2fits
+++ P_TIFF2FITS=/home/albireo/THELI/theli//bin/Linux_64//tiff2fits
P_CORRLIRIS=${BIN}/corrliris
+++ P_CORRLIRIS=/home/albireo/THELI/theli//bin/Linux_64//corrliris
P_CROSSTALK=${BIN}/crosstalk
+++ P_CROSSTALK=/home/albireo/THELI/theli//bin/Linux_64//crosstalk
P_FINDGSC=${BIN}/findgsc
+++ P_FINDGSC=/home/albireo/THELI/theli//bin/Linux_64//findgsc
P_FINDUSNOB1=${BIN}/findusnob1
+++ P_FINDUSNOB1=/home/albireo/THELI/theli//bin/Linux_64//findusnob1
P_FIND2MASS=${BIN}/find2mass
+++ P_FIND2MASS=/home/albireo/THELI/theli//bin/Linux_64//find2mass
P_FINDSDSS7=${BIN}/findsdss7
+++ P_FINDSDSS7=/home/albireo/THELI/theli//bin/Linux_64//findsdss7
P_FINDUCAC3=${BIN}/finducac3
+++ P_FINDUCAC3=/home/albireo/THELI/theli//bin/Linux_64//finducac3
P_FINDNOMAD1=${BIN}/findnomad1
+++ P_FINDNOMAD1=/home/albireo/THELI/theli//bin/Linux_64//findnomad1
P_VIZQUERY=${BIN}/vizquery
+++ P_VIZQUERY=/home/albireo/THELI/theli//bin/Linux_64//vizquery
P_SESAME=${BIN}/sesame
+++ P_SESAME=/home/albireo/THELI/theli//bin/Linux_64//sesame
P_ACLIENT=${BIN}/aclient
+++ P_ACLIENT=/home/albireo/THELI/theli//bin/Linux_64//aclient
P_SCAMP=${BIN}/scamp
+++ P_SCAMP=/home/albireo/THELI/theli//bin/Linux_64//scamp
P_RENAME=${BIN}/rename
+++ P_RENAME=/home/albireo/THELI/theli//bin/Linux_64//rename
P_MISSFITS=${BIN}/missfits
+++ P_MISSFITS=/home/albireo/THELI/theli//bin/Linux_64//missfits
P_SWARPFILTER=${BIN}/swarpfilter
+++ P_SWARPFILTER=/home/albireo/THELI/theli//bin/Linux_64//swarpfilter
P_FITSBLOCKEDIT=${BIN}/fitsblockedit
+++ P_FITSBLOCKEDIT=/home/albireo/THELI/theli//bin/Linux_64//fitsblockedit
P_FITSMASK=${BIN}/fitsmask
+++ P_FITSMASK=/home/albireo/THELI/theli//bin/Linux_64//fitsmask
P_FITSMEDIAN=${BIN}/fitsmedian
+++ P_FITSMEDIAN=/home/albireo/THELI/theli//bin/Linux_64//fitsmedian
P_FITSNANMASK=${BIN}/fitsnanmask
+++ P_FITSNANMASK=/home/albireo/THELI/theli//bin/Linux_64//fitsnanmask
P_FITSSTAT=${BIN}/fitsstat
+++ P_FITSSTAT=/home/albireo/THELI/theli//bin/Linux_64//fitsstat
P_FITSSPLITBAYER=${BIN}/fitssplitbayer
+++ P_FITSSPLITBAYER=/home/albireo/THELI/theli//bin/Linux_64//fitssplitbayer
P_FITSGUESSGEOM=${BIN}/fitsguessgeom
+++ P_FITSGUESSGEOM=/home/albireo/THELI/theli//bin/Linux_64//fitsguessgeom
P_SPLITSUPRIMECAM=${BIN}/splitsuprimecam
+++ P_SPLITSUPRIMECAM=/home/albireo/THELI/theli//bin/Linux_64//splitsuprimecam
P_PASTEDUALCHANNEL=${BIN}/paste_dualchannel
+++ P_PASTEDUALCHANNEL=/home/albireo/THELI/theli//bin/Linux_64//paste_dualchannel
P_PASTEQUADCHANNEL=${BIN}/paste_quadchannel
+++ P_PASTEQUADCHANNEL=/home/albireo/THELI/theli//bin/Linux_64//paste_quadchannel
P_SPLITGMOSMULTIPORT=${BIN}/split_gmos_multiport
+++ P_SPLITGMOSMULTIPORT=/home/albireo/THELI/theli//bin/Linux_64//split_gmos_multiport
P_SPLITGROND=${BIN}/split_grond
+++ P_SPLITGROND=/home/albireo/THELI/theli//bin/Linux_64//split_grond
P_GETSHIFT=${BIN}/get_shift
+++ P_GETSHIFT=/home/albireo/THELI/theli//bin/Linux_64//get_shift
P_FITSNONLINEARITY=${BIN}/fitsnonlinearity
+++ P_FITSNONLINEARITY=/home/albireo/THELI/theli//bin/Linux_64//fitsnonlinearity
P_FITSPIC=${BIN}/fitspic
+++ P_FITSPIC=/home/albireo/THELI/theli//bin/Linux_64//fitspic
P_FITSPOLYGON=${BIN}/fitspolygon
+++ P_FITSPOLYGON=/home/albireo/THELI/theli//bin/Linux_64//fitspolygon
P_EXPANDSEXMASK=${BIN}/expand_sexmask
+++ P_EXPANDSEXMASK=/home/albireo/THELI/theli//bin/Linux_64//expand_sexmask
P_DCRAW=${BIN}/dcraw
+++ P_DCRAW=/home/albireo/THELI/theli//bin/Linux_64//dcraw
P_DECSEXCONV=${BIN}/decsexconv
+++ P_DECSEXCONV=/home/albireo/THELI/theli//bin/Linux_64//decsexconv
P_STIFF=${BIN}/stiff
+++ P_STIFF=/home/albireo/THELI/theli//bin/Linux_64//stiff
P_SUBSKY=${BIN}/subsky
+++ P_SUBSKY=/home/albireo/THELI/theli//bin/Linux_64//subsky
P_GIFSICLE=${BIN}/gifsicle
+++ P_GIFSICLE=/home/albireo/THELI/theli//bin/Linux_64//gifsicle
P_XY2SKY=${BIN}/xy2sky
+++ P_XY2SKY=/home/albireo/THELI/theli//bin/Linux_64//xy2sky
P_SKY2XY=${BIN}/sky2xy
+++ P_SKY2XY=/home/albireo/THELI/theli//bin/Linux_64//sky2xy
P_ISFITS=${BIN}/isfits
+++ P_ISFITS=/home/albireo/THELI/theli//bin/Linux_64//isfits
P_GETKEY=${BIN}/getkey
+++ P_GETKEY=/home/albireo/THELI/theli//bin/Linux_64//getkey
P_SKY2XY_HELPER=${BIN}/sky2xy_helper
+++ P_SKY2XY_HELPER=/home/albireo/THELI/theli//bin/Linux_64//sky2xy_helper
P_GET_ROTIMSIZE=${BIN}/get_rotimsize
+++ P_GET_ROTIMSIZE=/home/albireo/THELI/theli//bin/Linux_64//get_rotimsize
P_CLEANSTRING=${BIN}/cleanstring
+++ P_CLEANSTRING=/home/albireo/THELI/theli//bin/Linux_64//cleanstring
P_NUMCPU=${BIN}/numcpu
+++ P_NUMCPU=/home/albireo/THELI/theli//bin/Linux_64//numcpu
P_GETSTATS=${BIN}/getstats
+++ P_GETSTATS=/home/albireo/THELI/theli//bin/Linux_64//getstats
P_CDELT2CD=${BIN}/cdelt2cd
+++ P_CDELT2CD=/home/albireo/THELI/theli//bin/Linux_64//cdelt2cd
P_GETCDMATRIX=${BIN}/get_cdmatrix
+++ P_GETCDMATRIX=/home/albireo/THELI/theli//bin/Linux_64//get_cdmatrix
P_GETPIXSCALE=${BIN}/get_pixscale
+++ P_GETPIXSCALE=/home/albireo/THELI/theli//bin/Linux_64//get_pixscale
P_GETPOSANGLE=${BIN}/get_posangle
+++ P_GETPOSANGLE=/home/albireo/THELI/theli//bin/Linux_64//get_posangle
P_GETREFCATRADIUS=${BIN}/get_refcat_radius
+++ P_GETREFCATRADIUS=/home/albireo/THELI/theli//bin/Linux_64//get_refcat_radius
P_MERGEDAT=${BIN}/mergedat
+++ P_MERGEDAT=/home/albireo/THELI/theli//bin/Linux_64//mergedat
P_ROTATECDMATRIX=${BIN}/rotate_cdmatrix
+++ P_ROTATECDMATRIX=/home/albireo/THELI/theli//bin/Linux_64//rotate_cdmatrix
P_BACKGROUNDDYNAMIC=${BIN}/background_dynamic
+++ P_BACKGROUNDDYNAMIC=/home/albireo/THELI/theli//bin/Linux_64//background_dynamic
P_BACKGROUNDSTATIC=${BIN}/background_static
+++ P_BACKGROUNDSTATIC=/home/albireo/THELI/theli//bin/Linux_64//background_static
P_MJD=${BIN}/mjd
+++ P_MJD=/home/albireo/THELI/theli//bin/Linux_64//mjd
P_LST=${BIN}/lst
+++ P_LST=/home/albireo/THELI/theli//bin/Linux_64//lst
P_IMALYZER=${BIN}/imalyzer
+++ P_IMALYZER=/home/albireo/THELI/theli//bin/Linux_64//imalyzer
P_E2ELL=${BIN}/e2ell
+++ P_E2ELL=/home/albireo/THELI/theli//bin/Linux_64//e2ell
P_FITSSMOOTHEDGE=${BIN}/fitssmoothedge
+++ P_FITSSMOOTHEDGE=/home/albireo/THELI/theli//bin/Linux_64//fitssmoothedge
P_FITSEXTRACTEXT=${BIN}/fitsextractext
+++ P_FITSEXTRACTEXT=/home/albireo/THELI/theli//bin/Linux_64//fitsextractext
P_ERRTEST=${BIN}/errtest
+++ P_ERRTEST=/home/albireo/THELI/theli//bin/Linux_64//errtest
P_BUILDINDEX=${BIN_ANET}/build-astrometry-index
+++ P_BUILDINDEX=/home/albireo/THELI/theli//gui/packages/astrometry/build/bin//build-astrometry-index
P_SOLVEFIELD=${BIN_ANET}/solve-field
+++ P_SOLVEFIELD=/home/albireo/THELI/theli//gui/packages/astrometry/build/bin//solve-field
P_XCORR=${BIN}/xcorr
+++ P_XCORR=/home/albireo/THELI/theli//bin/Linux_64//xcorr
#
# load the parameter files
#
. ~/.theli/param_set1.ini
+++ . /home/albireo/.theli/param_set1.ini
PROJECTNAME=Pferdekopf
++++ PROJECTNAME=Pferdekopf
NPARA=1
++++ NPARA=1
GUIVERSION=2.9.5
++++ GUIVERSION=2.9.5
KERNEL=Linux
++++ KERNEL=Linux
NFRAMES=47
++++ NFRAMES=47
V_PRE_SPLITMIRCUBE=N
++++ V_PRE_SPLITMIRCUBE=N
V_DO_BIAS=N
++++ V_DO_BIAS=N
V_DO_FLAT=Y
++++ V_DO_FLAT=Y
V_NONLINCORR=N
++++ V_NONLINCORR=N
V_AP_SERVER=vizier.u-strasbg.fr
++++ V_AP_SERVER=vizier.u-strasbg.fr
V_AP_MAGLIM=20
++++ V_AP_MAGLIM=20
V_AP_RADIUS=30
++++ V_AP_RADIUS=30
V_AP_REFRA=header
++++ V_AP_REFRA=header
V_AP_REFDEC=header
++++ V_AP_REFDEC=header
. ~/.theli/param_set2.ini
+++ . /home/albireo/.theli/param_set2.ini
V_PRE_RENAME_CHECKED=0
++++ V_PRE_RENAME_CHECKED=0
V_RENAME_FITSKEY=ARCFILE
++++ V_RENAME_FITSKEY=ARCFILE
V_SORT_FITSKEY=OBJECT
++++ V_SORT_FITSKEY=OBJECT
V_SORT_BIAS=
++++ V_SORT_BIAS=
V_SORT_DARK=
++++ V_SORT_DARK=
V_SORT_DOMEFLAT=
++++ V_SORT_DOMEFLAT=
V_SORT_SKYFLAT=
++++ V_SORT_SKYFLAT=
V_SORT_STD=
++++ V_SORT_STD=
V_PRE_XTALK_NOR_CHECKED=0
++++ V_PRE_XTALK_NOR_CHECKED=0
V_PRE_XTALK_ROW_CHECKED=0
++++ V_PRE_XTALK_ROW_CHECKED=0
V_PRE_XTALK_MULTI_CHECKED=0
++++ V_PRE_XTALK_MULTI_CHECKED=0
V_PRE_XTALK_NOR_AMPLITUDE=
++++ V_PRE_XTALK_NOR_AMPLITUDE=
V_PRE_XTALK_ROW_AMPLITUDE=
++++ V_PRE_XTALK_ROW_AMPLITUDE=
V_PRE_XTALK_NOR_BUTTONID=-1
++++ V_PRE_XTALK_NOR_BUTTONID=-1
V_PRE_XTALK_ROW_BUTTONID=-1
++++ V_PRE_XTALK_ROW_BUTTONID=-1
V_PRE_XTALK_MULTI_BUTTONID=-1
++++ V_PRE_XTALK_MULTI_BUTTONID=-1
V_PRE_XTALK_MULTI_NSECTION=
++++ V_PRE_XTALK_MULTI_NSECTION=
V_CAL_OVSCANNLOW=0
++++ V_CAL_OVSCANNLOW=0
V_CAL_OVSCANNHIGH=1
++++ V_CAL_OVSCANNHIGH=1
V_CAL_BIASNLOW=0
++++ V_CAL_BIASNLOW=0
V_CAL_BIASNHIGH=1
++++ V_CAL_BIASNHIGH=1
V_CAL_DARKNLOW=0
++++ V_CAL_DARKNLOW=0
V_CAL_DARKNHIGH=1
++++ V_CAL_DARKNHIGH=1
V_CAL_FLATNLOW=0
++++ V_CAL_FLATNLOW=0
V_CAL_FLATNHIGH=1
++++ V_CAL_FLATNHIGH=1
V_CAL_USEDARK=FALSE
++++ V_CAL_USEDARK=FALSE
V_BACK_NLOW=0
++++ V_BACK_NLOW=0
V_BACK_NHIGH=1
++++ V_BACK_NHIGH=1
V_BACK_DETECTTHRESH=1.3
++++ V_BACK_DETECTTHRESH=1.3
V_BACK_DETECTMINAREA=5
++++ V_BACK_DETECTMINAREA=5
V_BACK_MASKEXPAND=
++++ V_BACK_MASKEXPAND=
V_BACK_ILLUMSMOOTH=
++++ V_BACK_ILLUMSMOOTH=
V_BACK_FRINGESMOOTH=
++++ V_BACK_FRINGESMOOTH=
V_BACK_WINDOWSIZE=0
++++ V_BACK_WINDOWSIZE=0
V_BACK_GAPSIZE=1.0
++++ V_BACK_GAPSIZE=1.0
V_BACK_APPLYMODE=0
++++ V_BACK_APPLYMODE=0
V_BACK_COMBINEMETHOD=0
++++ V_BACK_COMBINEMETHOD=0
V_BACK_SEXFILTER=Y
++++ V_BACK_SEXFILTER=Y
V_BACK_ADJUSTGAINS=N
++++ V_BACK_ADJUSTGAINS=N
V_BACK_FRINGESCALE=Y
++++ V_BACK_FRINGESCALE=Y
V_BACK_SKY2PASS=Y
++++ V_BACK_SKY2PASS=Y
V_COLLDETECTTHRESH=
++++ V_COLLDETECTTHRESH=
V_COLLDETECTMINAREA=
++++ V_COLLDETECTMINAREA=
V_COLLMASKEXPAND=
++++ V_COLLMASKEXPAND=
V_COLLREJECTTHRESH=1.5
++++ V_COLLREJECTTHRESH=1.5
V_COLLDIRECTION=x
++++ V_COLLDIRECTION=x
V_COLLXMIN=
++++ V_COLLXMIN=
V_COLLXMAX=
++++ V_COLLXMAX=
V_COLLYMIN=
++++ V_COLLYMIN=
V_COLLYMAX=
++++ V_COLLYMAX=
V_COLLMASKACTION=1
++++ V_COLLMASKACTION=1
V_COLLAUTOTHRESHOLD=0
++++ V_COLLAUTOTHRESHOLD=0
V_WEIGHTBINMIN=-100
++++ V_WEIGHTBINMIN=-100
V_WEIGHTBINMAX=500
++++ V_WEIGHTBINMAX=500
V_WEIGHTBINSIZE=4
++++ V_WEIGHTBINSIZE=4
V_WEIGHTLOWTHRESHOLD=
++++ V_WEIGHTLOWTHRESHOLD=
V_WEIGHTHIGHTHRESHOLD=
++++ V_WEIGHTHIGHTHRESHOLD=
V_GLOBWFLATMIN=0.5
++++ V_GLOBWFLATMIN=0.5
V_GLOBWFLATMAX=1.6
++++ V_GLOBWFLATMAX=1.6
V_GLOBWDARKMIN=
++++ V_GLOBWDARKMIN=
V_GLOBWDARKMAX=
++++ V_GLOBWDARKMAX=
V_GLOBWDARKDIR=
++++ V_GLOBWDARKDIR=
V_COSMICSTHRESHOLD=0.1
++++ V_COSMICSTHRESHOLD=0.1
V_COSMICDT=6
++++ V_COSMICDT=6
V_COSMICDMIN=1
++++ V_COSMICDMIN=1
V_DEFECT_KERNELSIZE=
++++ V_DEFECT_KERNELSIZE=
V_DEFECT_ROWTOL=
++++ V_DEFECT_ROWTOL=
V_DEFECT_COLTOL=
++++ V_DEFECT_COLTOL=
V_DEFECT_CLUSTOL=
++++ V_DEFECT_CLUSTOL=
V_DEFECT_KERNELSIZE_SF=
++++ V_DEFECT_KERNELSIZE_SF=
V_DEFECT_ROWTOL_SF=
++++ V_DEFECT_ROWTOL_SF=
V_DEFECT_COLTOL_SF=
++++ V_DEFECT_COLTOL_SF=
V_DEFECT_CLUSTOL_SF=
++++ V_DEFECT_CLUSTOL_SF=
V_BLOOMLOWLIMIT=20000
++++ V_BLOOMLOWLIMIT=20000
V_BLOOMMINAREA=100
++++ V_BLOOMMINAREA=100
V_BLOOMWIDTH=0
++++ V_BLOOMWIDTH=0
V_WEIGHT_BINOUTLIER=FALSE
++++ V_WEIGHT_BINOUTLIER=FALSE
V_GLOBW_UNIFORMWEIGHT=FALSE
++++ V_GLOBW_UNIFORMWEIGHT=FALSE
V_MASKBLOOMSPIKE=0
++++ V_MASKBLOOMSPIKE=0
V_AP_DETECTTHRESH=5.0
++++ V_AP_DETECTTHRESH=5.0
V_AP_DETECTMINAREA=5
++++ V_AP_DETECTMINAREA=5
V_DEBLENDMINCONT=0.0005
++++ V_DEBLENDMINCONT=0.0005
V_AP_LOWNUM=1
++++ V_AP_LOWNUM=1
V_SEXCATMINFWHM=1.5
++++ V_SEXCATMINFWHM=1.5
V_SEXCATFLAG=0
++++ V_SEXCATFLAG=0
V_SATURATION=
++++ V_SATURATION=
V_SEXBACKLEVEL=
++++ V_SEXBACKLEVEL=
V_AP_FILTER=N
++++ V_AP_FILTER=N
V_SCAMP_MAXPOSANGLE=2.0
++++ V_SCAMP_MAXPOSANGLE=2.0
V_SCAMP_MAXOFFSET=2.0
++++ V_SCAMP_MAXOFFSET=2.0
V_SCAMP_MAXSCALE=1.05
++++ V_SCAMP_MAXSCALE=1.05
V_SCAMP_SNLOW=5
++++ V_SCAMP_SNLOW=5
V_SCAMP_SNHIGH=20
++++ V_SCAMP_SNHIGH=20
V_SCAMP_FGROUPRADIUS=1.0
++++ V_SCAMP_FGROUPRADIUS=1.0
V_SCAMP_CROSSIDRADIUS=0
++++ V_SCAMP_CROSSIDRADIUS=0
V_SCAMP_ASTREFWEIGHT=1.0
++++ V_SCAMP_ASTREFWEIGHT=1.0
V_SCAMP_ASTRINSTRUKEY=FILTER
++++ V_SCAMP_ASTRINSTRUKEY=FILTER
V_SCAMP_PHOTINSTRUKEY=FILTER
++++ V_SCAMP_PHOTINSTRUKEY=FILTER
V_SCAMP_POLYORDER=3
++++ V_SCAMP_POLYORDER=3
V_SCAMP_POLYORDER2=
++++ V_SCAMP_POLYORDER2=
V_SCAMP_DISTORTGROUPS=
++++ V_SCAMP_DISTORTGROUPS=
V_SCAMP_DISTORTKEYS=
++++ V_SCAMP_DISTORTKEYS=
V_SCAMP_STABILITY=INSTRUMENT
++++ V_SCAMP_STABILITY=INSTRUMENT
V_SCAMP_MOSAICTYPE=UNCHANGED
++++ V_SCAMP_MOSAICTYPE=UNCHANGED
V_SCAMP_FOCALPLANE=DEFAULT
++++ V_SCAMP_FOCALPLANE=DEFAULT
V_SCAMP_MATCHFLIPPED=N
++++ V_SCAMP_MATCHFLIPPED=N
V_SCAMP_MATCHWCS=Y
++++ V_SCAMP_MATCHWCS=Y
V_ANET_MAXSCALE=1.05
++++ V_ANET_MAXSCALE=1.05
V_ANET_POLYORDER=3
++++ V_ANET_POLYORDER=3
V_ANET_SCAMPDISTORT=N
++++ V_ANET_SCAMPDISTORT=N
V_ABSPHOT_FILTER=B
++++ V_ABSPHOT_FILTER=B
V_ABSPHOT_COLORFIXED=0.1
++++ V_ABSPHOT_COLORFIXED=0.1
V_ABSPHOT_EXTINCTION=0
++++ V_ABSPHOT_EXTINCTION=0
V_ABSPHOT_ZPMIN=24
++++ V_ABSPHOT_ZPMIN=24
V_ABSPHOT_ZPMAX=25
++++ V_ABSPHOT_ZPMAX=25
V_ABSPHOT_STDMINMAG=0.0
++++ V_ABSPHOT_STDMINMAG=0.0
V_ABSPHOT_MAXPHOTERR=0.05
++++ V_ABSPHOT_MAXPHOTERR=0.05
V_ABSPHOT_WCSERR=10
++++ V_ABSPHOT_WCSERR=10
V_ABSPHOT_WCSERRCHECKBOX=Y
++++ V_ABSPHOT_WCSERRCHECKBOX=Y
V_ABSPHOT_STDCAT_DIRECT=SDSS
++++ V_ABSPHOT_STDCAT_DIRECT=SDSS
V_ABSPHOT_STDFILTERM2=u
++++ V_ABSPHOT_STDFILTERM2=u
V_ABSPHOT_STDCAT_INDIRECT=LANDOLT_UBVRI
++++ V_ABSPHOT_STDCAT_INDIRECT=LANDOLT_UBVRI
V_ABSPHOT_STDFILTER=U
++++ V_ABSPHOT_STDFILTER=U
V_ABSPHOT_STDCOLOR=UmB
++++ V_ABSPHOT_STDCOLOR=UmB
V_ABSPHOT_CALMODE=RUNCALIB
++++ V_ABSPHOT_CALMODE=RUNCALIB
V_ABSPHOT_FITTINGMETHODM2=CHIP
++++ V_ABSPHOT_FITTINGMETHODM2=CHIP
V_COADD_REFRA=
++++ V_COADD_REFRA=
V_COADD_REFDEC=
++++ V_COADD_REFDEC=
V_COADD_IDENT=(null)
++++ V_COADD_IDENT=(null)
V_COADD_SEEING=
++++ V_COADD_SEEING=
V_COADD_RZP=
++++ V_COADD_RZP=
V_COADD_PIXSCALE=0.89
++++ V_COADD_PIXSCALE=0.89
V_COADD_SIZEX=
++++ V_COADD_SIZEX=
V_COADD_SIZEY=
++++ V_COADD_SIZEY=
V_COADD_SKYPOSANGLE=
++++ V_COADD_SKYPOSANGLE=
V_COADD_CHIPS=""
++++ V_COADD_CHIPS=
V_COADD_FILTERTHRESHOLD=
++++ V_COADD_FILTERTHRESHOLD=
V_COADD_FILTERCLUSTERSIZE=
++++ V_COADD_FILTERCLUSTERSIZE=
V_COADD_FILTERBORDERWIDTH=
++++ V_COADD_FILTERBORDERWIDTH=
V_COADD_SMOOTHEDGE=
++++ V_COADD_SMOOTHEDGE=
V_COADD_PROPMOTIONRA=
++++ V_COADD_PROPMOTIONRA=
V_COADD_PROPMOTIONDEC=
++++ V_COADD_PROPMOTIONDEC=
V_COADD_KERNEL=LANCZOS3
++++ V_COADD_KERNEL=LANCZOS3
V_COADD_FILTER=
++++ V_COADD_FILTER=
V_COADD_PROJECTION=TAN
++++ V_COADD_PROJECTION=TAN
V_COADD_CELESTIALTYPE=EQUATORIAL
++++ V_COADD_CELESTIALTYPE=EQUATORIAL
V_COADD_COMBINETYPE=WEIGHTED
++++ V_COADD_COMBINETYPE=WEIGHTED
. ~/.theli/param_set3.ini
+++ . /home/albireo/.theli/param_set3.ini

# Geographical latitude of the observatory
OBSLAT=
++ OBSLAT=

# Pixel scale in x and y [degrees] (CDELT1/2 keywords)
PIXSCX=-0
++ PIXSCX=-0
PIXSCY=0
++ PIXSCY=0

# Pixel scale in arcsec
PIXSCALE=
++ PIXSCALE=

# Detector gain
GAIN=1.0
++ GAIN=1.0

# Overscan regions. The values are the x-range.
# The min is given by OVSCANX1, the max by OVSCANX2.
# We need separate regions for each chip.

OVSCANX1=([1]=0)
++ OVSCANX1=([1]=0)
OVSCANX2=([1]=0)
++ OVSCANX2=([1]=0)

# Sections for the cutting. Select those pixels that receive light.
# Give min values for x and y, and the extent in x and y.

CUTX=([1]=1)
++ CUTX=([1]=1)
CUTY=([1]=1)
++ CUTY=([1]=1)
SIZEX=([1]=3358)
++ SIZEX=([1]=3358)
SIZEY=([1]=2536)
++ SIZEY=([1]=2536)

# Reference pixels for each chip.

REFPIXX=([1]=100)
++ REFPIXX=([1]=100)
REFPIXY=([1]=100)
++ REFPIXY=([1]=100)

# Camera type
TYPE=OPT
++ TYPE=OPT


. bash.include
+ . bash.include
function get_wcs {

  local k

  k=1
  cd11=""
  cd12=""
  cd21=""
  cd22=""
  cpx1=""
  cpx2=""

  while [ "${k}" -le "${NCHIPS}" ]
  do
    if [ "${NCHIPS}" = "1" ]; then
       ext=0
    else
       ext=${k}
    fi

    # test if the CD matrix is present
    testcd=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CD1_1 | ${P_GAWK} '(NR==2) {print $2}'`
    testcdelt=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CDELT1 | ${P_GAWK} '(NR==2) {print $2}'`
    testcdelt2=`echo ${testcdelt} | ${P_GAWK} '{if ($1>=1) print "bad"; else print "good"}'`
    if [ "${testcd}"_A != "_A" ] && [ "${testcd}" != "KEY_N/A" ]; then
        cdmatrix=`${P_DFITS} -x ${ext} ${FILE} | \
	          ${P_FITSORT} CD1_1 CD1_2 CD2_1 CD2_2 | \
                  ${P_GAWK} '($1!="FILE") {print $2, $3, $4, $5}'`
    else
	if [ "${testcdelt}"_A != "_A" ] && [ "${testcdelt}" != "KEY_N/A" ] && [ "${testcdelt2}" = "good" ] ; then
           cdmatrix=`${P_DFITS} -x ${ext} ${FILE} | \
                  ${P_FITSORT} CDELT1 CDELT2 | \
		  ${P_GAWK} '($1!="FILE") {print $2, "0.0", "0.0", $3}'`
    	else
           cdmatrix="${PIXSCX} 0.0 0.0 ${PIXSCY}"
        fi
    fi

    # test if the reference pixel is present
    testcrpix=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CRPIX1 | ${P_GAWK} '(NR==2) {print $2}'`
    if [ "${testcrpix}"_A != "_A" ] && [ "${testcrpix}" != "KEY_N/A" ]; then
        refpixel=`${P_DFITS} -x ${ext} ${FILE} | \
	          ${P_FITSORT} CRPIX1 CRPIX2 | \
                  ${P_GAWK} '($1!="FILE") {print $2, $3}'`
    else
	rpix1=${REFPIXX[${k}]}
	rpix2=${REFPIXY[${k}]}
	if [ "${rpix1}_A" = "_A" ]; then
	   rpix1=1
	fi	   
	if [ "${rpix2}_A" = "_A" ]; then
	   rpix2=1
	fi   
        refpixel="${rpix1} ${rpix2}"
    fi

    c11=`echo ${cdmatrix} | ${P_GAWK} '{print $1}'`
    c12=`echo ${cdmatrix} | ${P_GAWK} '{print $2}'`
    c21=`echo ${cdmatrix} | ${P_GAWK} '{print $3}'`
    c22=`echo ${cdmatrix} | ${P_GAWK} '{print $4}'`
    cr1=`echo ${refpixel} | ${P_GAWK} '{print $1}'`
    cr2=`echo ${refpixel} | ${P_GAWK} '{print $2}'`
    if [ "${k}" = "1" ]; then
       cd11="${c11}"
       cd12="${c12}"
       cd21="${c21}"
       cd22="${c22}"
       cpx1="${cr1}"
       cpx2="${cr2}"
    else
       cd11="${cd11},${c11}"
       cd12="${cd12},${c12}"
       cd21="${cd21},${c21}"
       cd22="${cd22},${c22}"
       cpx1="${cpx1},${cr1}"
       cpx2="${cpx2},${cr2}"
    fi

    k=$(( $k + 1 ))
  done
}

function get_wcsext {

  local k

  k=1
  cd11=""
  cd12=""
  cd21=""
  cd22=""
  cpx1=""
  cpx2=""

  while [ "${k}" -le "${NCHIPS}" ]
  do
    ext=1

    # test if the CD matrix is present
    testcd=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CD1_1 | ${P_GAWK} '(NR==2) {print $2}'`
    testcdelt=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CDELT1 | ${P_GAWK} '(NR==2) {print $2}'`
    testcdelt2=`echo ${testcdelt} | ${P_GAWK} '{if ($1>=1) print "bad"; else print "good"}'`
    if [ "${testcd}"_A != "_A" ] && [ "${testcd}" != "KEY_N/A" ]; then
        cdmatrix=`${P_DFITS} -x ${ext} ${FILE} | \
	          ${P_FITSORT} CD1_1 CD1_2 CD2_1 CD2_2 | \
                  ${P_GAWK} '($1!="FILE") {print $2, $3, $4, $5}'`
    else
	if [ "${testcdelt}"_A != "_A" ] && [ "${testcdelt}" != "KEY_N/A" ] && [ "${testcdelt2}" = "good" ] ; then
           cdmatrix=`${P_DFITS} -x ${ext} ${FILE} | \
                  ${P_FITSORT} CDELT1 CDELT2 | \
		  ${P_GAWK} '($1!="FILE") {print $2, "0.0", "0.0", $3}'`
    	else
           cdmatrix="${PIXSCX} 0.0 0.0 ${PIXSCY}"
        fi
    fi

    # test if the reference pixel is present
    testcrpix=`${P_DFITS} -x ${ext} ${FILE} | ${P_FITSORT} CRPIX1 | ${P_GAWK} '(NR==2) {print $2}'`
    if [ "${testcrpix}"_A != "_A" ] && [ "${testcrpix}" != "KEY_N/A" ]; then
        refpixel=`${P_DFITS} -x ${ext} ${FILE} | \
	          ${P_FITSORT} CRPIX1 CRPIX2 | \
                  ${P_GAWK} '($1!="FILE") {print $2, $3}'`
    else
	rpix1=${REFPIXX[${k}]}
	rpix2=${REFPIXY[${k}]}
	if [ "${rpix1}_A" = "_A" ]; then
	   rpix1=1
	fi	   
	if [ "${rpix2}_A" = "_A" ]; then
	   rpix2=1
	fi   
        refpixel="${rpix1} ${rpix2}"
    fi

    c11=`echo ${cdmatrix} | ${P_GAWK} '{print $1}'`
    c12=`echo ${cdmatrix} | ${P_GAWK} '{print $2}'`
    c21=`echo ${cdmatrix} | ${P_GAWK} '{print $3}'`
    c22=`echo ${cdmatrix} | ${P_GAWK} '{print $4}'`
    cr1=`echo ${refpixel} | ${P_GAWK} '{print $1}'`
    cr2=`echo ${refpixel} | ${P_GAWK} '{print $2}'`
    if [ "${k}" = "1" ]; then
       cd11="${c11}"
       cd12="${c12}"
       cd21="${c21}"
       cd22="${c22}"
       cpx1="${cr1}"
       cpx2="${cr2}"
    else
       cd11="${cd11},${c11}"
       cd12="${cd12},${c12}"
       cd21="${cd21},${c21}"
       cd22="${cd22},${c22}"
       cpx1="${cpx1},${cr1}"
       cpx2="${cpx2},${cr2}"
    fi

    k=$(( $k + 1 ))
  done
}



function get_statminsection {
	 
  local xmin
  local ymin
  local xmax
  local ymax

  if  [ "${STATXMIN[${CHIP}]}"_A != "_A" ] && \
      [ "${STATXMAX[${CHIP}]}"_A != "_A" ] && \
      [ "${STATYMIN[${CHIP}]}"_A != "_A" ] && \
      [ "${STATYMAX[${CHIP}]}"_A != "_A" ]; then
      xmin=${STATXMIN[${CHIP}]}
      xmax=${STATXMAX[${CHIP}]}
      ymin=${STATYMIN[${CHIP}]}
      ymax=${STATYMAX[${CHIP}]}
  else
    k=1
    statminsection=""
    xmax=${SIZEX[1]}
    ymax=${SIZEY[1]}

    while [ "${k}" -le "${NCHIPS}" ]
    do
	if [ ${SIZEX[k]} -lt ${xmax} ]; then
       	    xmax=${SIZEX[k]}
    	fi
    	if [ ${SIZEY[k]} -lt ${ymax} ]; then
       	    ymax=${SIZEY[k]}
        fi
        k=$((${k}+1))
    done
    
    xmin=2
    ymin=2
    xmax=$((${xmax}-1))
    ymax=$((${ymax}-1))
  fi

  statminsection="${xmin},${xmax},${ymin},${ymax}"
}


function p_ls {
  ls -l | grep ^- | ${P_GAWK} '{print $NF}'
}

# the following extracts keywords;
# leading and trailing whitespace is removed (2nd call to gawk)
# and blanks inside the keyword value are replaced with underscores (e.g. for OBJECT keyword)
function get_key {
  ${P_DFITS} $1 | ${P_FITSORT} -d "$2" | ${P_GAWK} 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}' | ${P_GAWK} '{$1=$1}1' | sed 's/ /_/g'
}

function get_keyext {
  ${P_DFITS} -x 1 $1 | ${P_FITSORT} -d "$2" | ${P_GAWK} '{if ($2!="KEY_N/A") print $2}'
}

function get_region {
  # merge global and local region files if they exist
  regionfile=""
  region=""

  test -f ${TEMPDIR}/regionfile_${CHIP}.reg && rm ${TEMPDIR}/regionfile_${CHIP}.reg 

  if [ -f ${INSTDIR}/${INSTRUMENT}.reg ]; then
  	cat ${INSTDIR}/${INSTRUMENT}.reg >> \
  	    ${TEMPDIR}/regionfile_${CHIP}.reg
  	regionfile="${TEMPDIR}/regionfile_${CHIP}.reg"
	region="-d ${regionfile}"
  fi
  if [ -f ${INSTDIR}/${INSTRUMENT}_${CHIP}.reg ]; then
  	cat ${INSTDIR}/${INSTRUMENT}_${CHIP}.reg >> \
  	    ${TEMPDIR}/regionfile_${CHIP}.reg
  	regionfile="${TEMPDIR}/regionfile_${CHIP}.reg"
	region="-d ${regionfile}"
  fi
}

function get_region_chip {
  # merge global and local region files if they exist
  # for a different chip than the currently processed one 
  # (constant sky subtraction)
  regionfile=""
  region=""

  test -f ${TEMPDIR}/regionfile_$1.reg_$$ && rm ${TEMPDIR}/regionfile_$1.reg_$$

  if [ -f ${INSTDIR}/${INSTRUMENT}.reg ]; then
  	cat ${INSTDIR}/${INSTRUMENT}.reg >> \
  	    ${TEMPDIR}/regionfile_$1.reg_$$
  	regionfile="${TEMPDIR}/regionfile_$1.reg_$$"
	region="-d ${regionfile}"
  fi
  if [ -f ${INSTDIR}/${INSTRUMENT}_$1.reg ]; then
  	cat ${INSTDIR}/${INSTRUMENT}_$1.reg >> \
  	    ${TEMPDIR}/regionfile_$1.reg_$$
  	regionfile="${TEMPDIR}/regionfile_$1.reg_$$"
	region="-d ${regionfile}"
  fi
}

function prepare_sex_for_region {
  backstring=""
  weightstring=""
  if [ -f ${regionfile} ] && [ "${regionfile}_A" != "_A" ]; then
      # estimate the background, ignoring blanked pixels
      background=`${P_FITSSTAT} -i ${FILE} -m median -q`
      backstring="-BACK_TYPE MANUAL -BACK_VALUE ${background}"
      weightstring="-WEIGHT_TYPE MAP_WEIGHT -WEIGHT_IMAGE /$1/WEIGHTS/globalweight_dummy_${CHIP}.fits"

      # check if the dummy weight exists
      if [ ! -e /$1/WEIGHTS/globalweight_dummy_${CHIP}.fits ]; then
	  mkdir -p /$1/WEIGHTS/
	  ${P_IC} -p -32 -c ${SIZEX[${CHIP}]} ${SIZEY[${CHIP}]} '1' > ${TEMPDIR}/dummy_${CHIP}.fits
	  ${P_FITSPOLYGON} -i ${TEMPDIR}/dummy_${CHIP}.fits -p ${regionfile} \
	      -o /$1/WEIGHTS/globalweight_dummy_${CHIP}.fits
	  rm ${TEMPDIR}/dummy_${CHIP}.fits
      fi
  fi
}


function prepare_imred_for_backgroundmodel {
  # The relevant settings depending on the apply mode of the background model
  flatstring=""
  fringestring=""

  ####################################################
  # subtract background model
  ####################################################
  if [ "${V_BACK_APPLYMODE}" -eq 0 ]; then
      fringestring="-FLAT N -FRINGE Y -FRINGE_SCALE ${V_BACK_FRINGESCALE}"
      if [ "${V_BACK_ILLUMSMOOTH}"_A != "_A" ]; then
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}_illum.fits
      else
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}.fits
      fi
      fringestring="${fringestring} -FRINGE_IMAGE ${FRINGEIMAGE} -FRINGE_REFIMAGE ${FRINGEIMAGE}"
  fi

  ####################################################
  # divide background model
  ####################################################
  if [ "${V_BACK_APPLYMODE}" -eq 1 ]; then
      flatstring="-FRINGE N -FLAT Y -FLAT_THRESHHOLD 0.1 -FLAT_SCALE ${V_BACK_ADJUSTGAINS}"
      if [ "${V_BACK_ILLUMSMOOTH}"_A != "_A" ]; then
	  FLATIMAGE=/$1/$2/$2_${CHIP}_illum.fits
      else
	  FLATIMAGE=/$1/$2/$2_${CHIP}.fits
      fi
      flatstring="${flatstring} -FLAT_IMAGE ${FLATIMAGE} -FLAT_SCALEIMAGE ${FLATIMAGE}"
  fi

  ####################################################
  # subtract fringing model
  ####################################################
  if [ "${V_BACK_APPLYMODE}" -eq 2 ]; then
      fringestring="-FRINGE Y -FRINGE_SCALE ${V_BACK_FRINGESCALE}"
      if [ "${V_BACK_FRINGESMOOTH}"_A != "_A" ]; then
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}_fringe_smooth.fits
      else
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}_fringe.fits
      fi
      fringestring="${fringestring} -FRINGE_IMAGE ${FRINGEIMAGE} -FRINGE_REFIMAGE /$1/$2/$2_${CHIP}_illum.fits"
  fi

  ####################################################
  # divide background model, subtract fringing model
  ####################################################
  if [ "${V_BACK_APPLYMODE}" -eq 3 ]; then
      flatstring="-FLAT Y -FLAT_THRESHHOLD 0.1 -FLAT_SCALE ${V_BACK_ADJUSTGAINS}"
      if [ "${V_BACK_ILLUMSMOOTH}"_A != "_A" ]; then
	  FLATIMAGE=/$1/$2/$2_${CHIP}_illum.fits
      else
	  FLATIMAGE=/$1/$2/$2_${CHIP}.fits
      fi
      flatstring="${flatstring} -FLAT_IMAGE ${FLATIMAGE} -FLAT_SCALEIMAGE ${FLATIMAGE}"

      fringestring="-FRINGE Y -FRINGE_SCALE ${V_BACK_FRINGESCALE}"
      if [ "${V_BACK_FRINGESMOOTH}"_A != "_A" ]; then
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}_fringe_smooth.fits
      else
	  FRINGEIMAGE=/$1/$2/$2_${CHIP}_fringe.fits
      fi
      fringestring="${fringestring} -FRINGE_IMAGE ${FRINGEIMAGE} -FRINGE_REFIMAGE /$1/$2/$2_${CHIP}_illum.fits"
  fi

}

# the resultdir is where the output coadded images
# will go. If ONE image of the corresponding chip
# is a link the image will go to THIS directory
for CHIP in $5
do
  RESULTDIR[${CHIP}]="$1/$4"
done
+ for CHIP in '$5'
+ RESULTDIR[${CHIP}]=/home/albireo/14-17.02.2015/rgb//science

get_statminsection
+ get_statminsection
+ local xmin
+ local ymin
+ local xmax
+ local ymax
+ '[' _A '!=' _A ']'
+ k=1
+ statminsection=
+ xmax=3358
+ ymax=2536
+ '[' 1 -le 1 ']'
+ '[' 3358 -lt 3358 ']'
+ '[' 2536 -lt 2536 ']'
+ k=2
+ '[' 2 -le 1 ']'
+ xmin=2
+ ymin=2
+ xmax=3357
+ ymax=2535
+ statminsection=2,3357,2,2535

# perform preprocessing (overscan correction,
# BIAS subtraction, first flatfield pass)
for CHIP in $5
do

# check whether the superflat exists.
# if yes, then delete it.

    test -f $1/$4/$4_${CHIP}.fits && rm $1/$4/$4_${CHIP}.fits
    test -f $1/$4/$4_${CHIP}_illum.fits && rm $1/$4/$4_${CHIP}_illum.fits
    test -f $1/$4/$4_${CHIP}_fringe.fits && rm $1/$4/$4_${CHIP}_fringe.fits

    FILES=`ls $1/$4/*_${CHIP}.fits`
    
    for FILE in ${FILES}
    do
	BAYERPATTERN=`get_key ${FILE} BAYERPAT`
	if [ -L ${FILE} ]; then
	    LINK=`${P_READLINK} ${FILE}`
 	    BASE=`basename ${LINK} .fits`
 	    DIR=`dirname ${LINK}`
 	    ln -s ${DIR}/${BASE}OFC.fits $1/$4/${BASE}OFC.fits
 	    RESULTDIR[${CHIP}]=`dirname ${LINK}`    
	fi
    done 
    
    MAXX=$(( ${CUTX[${CHIP}]} + ${SIZEX[${CHIP}]} - 1 ))
    MAXY=$(( ${CUTY[${CHIP}]} + ${SIZEY[${CHIP}]} - 1 ))
    
    do_overscan=Y
    if [ "${OVSCANX1[${CHIP}]}" = "0" ] && \
	[ "${OVSCANX2[${CHIP}]}" = "0" ]; then
	do_overscan=N
    fi
    
    # flat scaling
    if [ "${V_DO_FLAT}" = "Y" ]; then
	FLATSCALEVALUE=`cat /$1/$3/.maxlevel.dat`
	FLATFLAG="-FLAT_SCALE ${V_DO_FLAT} -FLAT_SCALEVALUE ${FLATSCALEVALUE}" 
    else
	FLATFLAG="-FLAT_SCALE ${V_DO_FLAT}"
    fi

    # check if a dark is subtracted, and if yes,
    # then if it needs to be rescaled
    # we subtract the mode of the dark to account for the bias level (on zero order)

    BIASDARKIMAGE=/$1/$2/$2_${CHIP}.fits

    if [ "${V_CAL_USEDARK}" = "TRUE" ] && [ "${V_DO_BIAS}" = "Y" ]; then
	DARKTIME=`get_key /$1/$2/$2_${CHIP}.fits EXPTIME`
	if [ "${DARKTIME}"_A != "_A" ]; then
	    echo "ok, dark exposure time present; rescaling"
	    testimage=`ls /$1/$4/*_${CHIP}.fits | ${P_GAWK} '(NR==1)'`
	    EXPTIME=`get_key ${testimage} EXPTIME`
	    MODE=`${P_IMSTATS} /$1/$2/$2_${CHIP}.fits | ${P_GAWK} '($0!~/#/) {print $2}'`
	    RESCALE=`echo ${DARKTIME} ${EXPTIME} | \
		${P_GAWK} '{x=1.-$1/$2; if (x<0.01 && x> -0.01) print "NO"; else print $2/$1}'`
	    if [ "${RESCALE}" != "NO" ]; then
		${P_IC} '%1 '${MODE}' - '${RESCALE}' *' \
		    /$1/$2/$2_${CHIP}.fits > \
		    /$1/$2/$2_${CHIP}rescaled.fits
		BIASDARKIMAGE=/$1/$2/$2_${CHIP}rescaled.fits
	    fi
	fi
    fi
    
    # health checks
    if [ "${V_DO_BIAS}" = "Y" ] && [ ! -f ${BIASDARKIMAGE} ]; then
	echo `${P_ERRTEST} 0`": Could not find master BIAS for chip ${CHIP}"
	continue
    fi
    if [ "${V_DO_FLAT}" = "Y" ] && [ ! -f /$1/$3/$3_${CHIP}.fits ]; then
	echo `${P_ERRTEST} 0`": Could not find master FLAT for chip ${CHIP}"
	continue
    fi

    # without nonlinearity correction
    if [ "${V_NONLINCORR}" = "N" ] || [ ! -f ${INSTDIR}/${INSTRUMENT}".nldat" ]; then
        # overscan correct, bias subtract and flatfield
        # science images:

	# enforce an upper limit to maximages (required by preprocess)
	if [ ${NFRAMES} -gt 1000 ]; then
	    NFRAMES=1000
	fi

	${P_IMRED_ECL:?} `ls /$1/$4/*_${CHIP}.fits` \
	    -c ${CONF}/imred.conf \
	    -MAXIMAGES ${NFRAMES} \
	    -OVERSCAN ${do_overscan} \
	    -OVERSCAN_REGION ${OVSCANX1[${CHIP}]},${OVSCANX2[${CHIP}]} \
	    -OVERSCAN_REJECT ${V_CAL_OVSCANNLOW},${V_CAL_OVSCANNHIGH} \
	    -BIAS ${V_DO_BIAS} \
	    -BIAS_IMAGE ${BIASDARKIMAGE} \
	    -FLAT ${V_DO_FLAT} \
	    -FLAT_IMAGE /$1/$3/$3_${CHIP}.fits \
	    -COMBINE N \
	    -OUTPUT Y \
	    -OUTPUT_DIR /$1/$4/ \
	    -OUTPUT_SUFFIX OFC.fits \
	    -TRIM Y \
	    -FLAT_THRESHHOLD 0.1 \
	    -TRIM_REGION ${CUTX[${CHIP}]},${MAXX},${CUTY[${CHIP}]},${MAXY} \
	    -STATSSEC ${statminsection} ${FLATFLAG}
    fi

    # with nonlinearity correction
    if [ "${V_NONLINCORR}" = "Y" ] && [ -f ${INSTDIR}/${INSTRUMENT}".nldat" ]; then
        # overscan correct and bias subtract science images:
	${P_IMRED_ECL:?} `ls /$1/$4/*_${CHIP}.fits` \
	    -c ${CONF}/imred.conf \
	    -MAXIMAGES ${NFRAMES} \
	    -OVERSCAN ${do_overscan} \
	    -OVERSCAN_REGION ${OVSCANX1[${CHIP}]},${OVSCANX2[${CHIP}]} \
	    -OVERSCAN_REJECT ${V_CAL_OVSCANNLOW},${V_CAL_OVSCANNHIGH} \
	    -BIAS ${V_DO_BIAS} \
	    -BIAS_IMAGE ${BIASDARKIMAGE} \
	    -COMBINE N \
	    -OUTPUT Y \
	    -OUTPUT_DIR /$1/$4/ \
	    -OUTPUT_SUFFIX O.fits \
	    -TRIM Y \
	    -TRIM_REGION ${CUTX[${CHIP}]},${MAXX},${CUTY[${CHIP}]},${MAXY} \
	    -STATSSEC ${statminsection} ${FLATFLAG}

	# do the nonlinearity correction
	ls /$1/$4/*_${CHIP}O.fits > ${TEMPDIR}/nonlinlist_$$
	cat ${TEMPDIR}/nonlinlist_$$ |\
          {
	    while read file
	    do
		BASE=`basename ${file} _${CHIP}O.fits`
		${P_FITSNONLINEARITY} -i ${file} -o ${RESULTDIR[${CHIP}]}/${BASE}_${CHIP}ON.fits \
		    -c ${CHIP} -f ${INSTDIR}/${INSTRUMENT}".nldat"
		mv ${RESULTDIR[${CHIP}]}/${BASE}_${CHIP}ON.fits ${RESULTDIR[${CHIP}]}/${BASE}_${CHIP}O.fits 
	    done
	}

	# flatfield the images
	${P_IMRED_ECL:?} `ls /$1/$4/*_${CHIP}O.fits` \
	    -c ${CONF}/imred.conf \
	    -MAXIMAGES ${NFRAMES} \
	    -FLAT ${V_DO_FLAT} \
	    -FLAT_IMAGE /$1/$3/$3_${CHIP}.fits \
	    -COMBINE N \
	    -OUTPUT Y \
	    -OUTPUT_DIR /$1/$4/ \
	    -OUTPUT_SUFFIX FC.fits \
	    -FLAT_THRESHHOLD 0.1 \
	    -STATSSEC ${statminsection} ${FLATFLAG}

	rm /$1/$4/*_${CHIP}O.fits
    fi
    
    # do the demosaicing if requested
    if [ ! "${BAYERPATTERN}_A" = "_A" ]; then
	BAYERFILES=`ls $1/$4/*_${CHIP}OFC.fits`
	for FILE in ${BAYERFILES}
	do
	    BAYERPATTERN=`get_key ${FILE} BAYERPAT`

	    BASE=`basename ${FILE} _${CHIP}OFC.fits`
	    ${P_FITSDEMOSAICBAYER} -i ${FILE} -p ${BAYERPATTERN} -q 2
	    
	    ${P_REPLACEKEY} $1/$4/${BASE}_${CHIP}OFC.R.fits "FILTER  = 'Red'" FILTER
	    ${P_REPLACEKEY} $1/$4/${BASE}_${CHIP}OFC.G.fits "FILTER  = 'Green'" FILTER
	    ${P_REPLACEKEY} $1/$4/${BASE}_${CHIP}OFC.B.fits "FILTER  = 'Blue'" FILTER

       	    mv $1/$4/${BASE}_${CHIP}OFC.R.fits $1/$4/${BASE}_R_${CHIP}OFC.fits
	    mv $1/$4/${BASE}_${CHIP}OFC.G.fits $1/$4/${BASE}_G_${CHIP}OFC.fits
	    mv $1/$4/${BASE}_${CHIP}OFC.B.fits $1/$4/${BASE}_B_${CHIP}OFC.fits
	    rm ${FILE}
	done
    fi

    if [ ! -d /$1/$4/SPLIT_IMAGES ]; then
 	mkdir /$1/$4/SPLIT_IMAGES
    fi
    mv /$1/$4/*_${CHIP}.fits /$1/$4/SPLIT_IMAGES
done
+ for CHIP in '$5'
+ test -f /home/albireo/14-17.02.2015/rgb//science/science_1.fits
+ test -f /home/albireo/14-17.02.2015/rgb//science/science_1_illum.fits
+ test -f /home/albireo/14-17.02.2015/rgb//science/science_1_fringe.fits
ls $1/$4/*_${CHIP}.fits
++ ls /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-17-56_rot_1.fits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-29-10_Green_1.fits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-39-48_Red_1.fits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-50-06_Green_1.fits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-00-24_Blue_1.fits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-10-44_Red_1.fits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-21-02_Green_1.fits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-31-20_Blue_1.fits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-41-40_Red_1.fits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-51-58_Green_1.fits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_21-02-16_Blue_1.fits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_21-12-35_Red_1.fits
+ FILES='/home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-17-56_rot_1.fits
/home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-29-10_Green_1.fits
/home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-39-48_Red_1.fits
/home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-50-06_Green_1.fits
/home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-00-24_Blue_1.fits
/home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-10-44_Red_1.fits
/home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-21-02_Green_1.fits
/home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-31-20_Blue_1.fits
/home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-41-40_Red_1.fits
/home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-51-58_Green_1.fits
/home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_21-02-16_Blue_1.fits
/home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_21-12-35_Red_1.fits'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-17-56_rot_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-17-56_rot_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ /usr/bin/gawk '{$1=$1}1'
++ sed 's/ /_/g'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-17-56_rot_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-29-10_Green_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-29-10_Green_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ /usr/bin/gawk '{$1=$1}1'
++ sed 's/ /_/g'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-29-10_Green_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-39-48_Red_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-39-48_Red_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ sed 's/ /_/g'
++ /usr/bin/gawk '{$1=$1}1'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-39-48_Red_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-50-06_Green_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-50-06_Green_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ /usr/bin/gawk '{$1=$1}1'
++ sed 's/ /_/g'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-50-06_Green_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-00-24_Blue_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-00-24_Blue_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ /usr/bin/gawk '{$1=$1}1'
++ sed 's/ /_/g'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-00-24_Blue_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-10-44_Red_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-10-44_Red_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ /usr/bin/gawk '{$1=$1}1'
++ sed 's/ /_/g'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-10-44_Red_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-21-02_Green_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-21-02_Green_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ /usr/bin/gawk '{$1=$1}1'
++ sed 's/ /_/g'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-21-02_Green_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-31-20_Blue_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-31-20_Blue_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk '{$1=$1}1'
++ sed 's/ /_/g'
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-31-20_Blue_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-41-40_Red_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-41-40_Red_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ /usr/bin/gawk '{$1=$1}1'
++ sed 's/ /_/g'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-41-40_Red_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-51-58_Green_1.fits BAYERPAT
++ sed 's/ /_/g'
++ /usr/bin/gawk '{$1=$1}1'
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-51-58_Green_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-51-58_Green_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_21-02-16_Blue_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ sed 's/ /_/g'
++ /usr/bin/gawk '{$1=$1}1'
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_21-02-16_Blue_1.fits
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_21-02-16_Blue_1.fits ']'
+ for FILE in '${FILES}'
get_key ${FILE} BAYERPAT
++ get_key /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_21-12-35_Red_1.fits BAYERPAT
++ /home/albireo/THELI/theli//bin/Linux_64//dfits /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_21-12-35_Red_1.fits
++ /home/albireo/THELI/theli//bin/Linux_64//fitsort -d BAYERPAT
++ sed 's/ /_/g'
++ /usr/bin/gawk '{$1=$1}1'
++ /usr/bin/gawk 'BEGIN{FS="\t"} {if ($2!~/KEY_N\/A/) print $2}'
+ BAYERPATTERN=
+ '[' -L /home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_21-12-35_Red_1.fits ']'
+ MAXX=3358
+ MAXY=2536
+ do_overscan=Y
+ '[' 0 = 0 ']'
+ '[' 0 = 0 ']'
+ do_overscan=N
+ '[' Y = Y ']'
cat /$1/$3/.maxlevel.dat
++ cat //home/albireo/14-17.02.2015/rgb//flat/.maxlevel.dat
+ FLATSCALEVALUE=
+ FLATFLAG='-FLAT_SCALE Y -FLAT_SCALEVALUE '
+ BIASDARKIMAGE=//home/albireo/14-17.02.2015/rgb//BIAS/BIAS_1.fits
+ '[' FALSE = TRUE ']'
+ '[' N = Y ']'
+ '[' Y = Y ']'
+ '[' '!' -f //home/albireo/14-17.02.2015/rgb//flat/flat_1.fits ']'
+ '[' N = N ']'
+ '[' 47 -gt 1000 ']'
ls /$1/$4/*_${CHIP}.fits
++ ls //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-17-56_rot_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-29-10_Green_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-39-48_Red_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-50-06_Green_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-00-24_Blue_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-10-44_Red_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-21-02_Green_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-31-20_Blue_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-41-40_Red_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-51-58_Green_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_21-02-16_Blue_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_21-12-35_Red_1.fits
+ /home/albireo/THELI/theli//bin/Linux_64//preprocess //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-17-56_rot_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-29-10_Green_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-39-48_Red_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-50-06_Green_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-00-24_Blue_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-10-44_Red_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-21-02_Green_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-31-20_Blue_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-41-40_Red_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-51-58_Green_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_21-02-16_Blue_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_21-12-35_Red_1.fits -c /home/albireo/THELI/theli//gui/reduction/imred.conf -MAXIMAGES 47 -OVERSCAN N -OVERSCAN_REGION 0,0 -OVERSCAN_REJECT 0,1 -BIAS N -BIAS_IMAGE //home/albireo/14-17.02.2015/rgb//BIAS/BIAS_1.fits -FLAT Y -FLAT_IMAGE //home/albireo/14-17.02.2015/rgb//flat/flat_1.fits -COMBINE N -OUTPUT Y -OUTPUT_DIR //home/albireo/14-17.02.2015/rgb//science/ -OUTPUT_SUFFIX OFC.fits -TRIM Y -FLAT_THRESHHOLD 0.1 -TRIM_REGION 1,3358,1,2536 -STATSSEC 2,3357,2,2535 -FLAT_SCALE Y -FLAT_SCALEVALUE


	 \_/   **** fatal error in pid 17302
	'-0-'  **** segmentation fault or bus error
	--0--
	.-0-.


+ '[' N = Y ']'
+ '[' '!' _A = _A ']'
+ '[' '!' -d //home/albireo/14-17.02.2015/rgb//science/SPLIT_IMAGES ']'
+ mkdir //home/albireo/14-17.02.2015/rgb//science/SPLIT_IMAGES
+ mv //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-17-56_rot_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-29-10_Green_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-39-48_Red_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_19-50-06_Green_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-00-24_Blue_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-10-44_Red_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-21-02_Green_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-31-20_Blue_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-41-40_Red_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_20-51-58_Green_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_21-02-16_Blue_1.fits //home/albireo/14-17.02.2015/rgb//science/pferdekopf_2015-02-16_21-12-35_Red_1.fits //home/albireo/14-17.02.2015/rgb//science/SPLIT_IMAGES